RetrogeneDB ID:

retro_pvam_899

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_15662:13482..13915(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPVAG00000017436
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pvam_899
ATGGCAGCTCAAATTCCAGTTGTGGCCACCATCACCACTCTGAGGATAGCCTGGAACAGCAAGAAGAGGCCAGCCAGTTC
TTCCCACAATGGCAACAGTGCTGGGGGATACAGCGCCAGTAAGAAGAAAAAAGCATCCACCTCTACTTTTGTGTAGGGTA
TCAGCATGAAAGCCATGACTGAGAATAAATGGTGCCTTCAGATTTTAGCACAGGACCTCTGGAAAAAACTGCCAAACCTT
TGACATTTAAAGATTCCAACTTTGTGCACTCTGGCCATGGTGGTGCAAGCAGAATAGAACCTGAAAGAACCTTAAACAAA
TTCTTGCTTCAGGAAGGGCATTGCCATGGCAACTGAATGATCCCAACTACTTCAGTATTGATGTTCCTCCATCCTTCAAT
CCAGCTAAGAAGTATTCTGATGTTTTAAATCTT

ORF - retro_pvam_899 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.33 %
Parental protein coverage: 99.33 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAAQIPIVATTTTPGIARNSKKRPASPSHNSSSAGIYSASKKKKASTSSFAQGISMEAMAENK-MVPSDF
MAAQIP.VAT.TT..IA.NSKKRPAS.SHN..SAG.YSASKKKKASTS.F..GISM.AM.ENK.MVPSDF
RetrocopyMAAQIPVVATITTLRIAWNSKKRPASSSHNGNSAGGYSASKKKKASTSTFV*GISMKAMTENK<MVPSDF
ParentalSTGPMEKTAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASE-RALPWQLNDPNYFSIDAPPSFKP
STGP.EKTAKPL.FKD.NFVHSGHGGA......RT...L...L..E.RALPWQLNDPNYFSID.PPSF.P
RetrocopySTGPLEKTAKPLTFKDSNFVHSGHGGASRIEPERT---LNKFLLQE<RALPWQLNDPNYFSIDVPPSFNP
ParentalAKKYSDVSGL
AKKYSDV..L
RetrocopyAKKYSDVLNL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_899 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000178841 retrocopy
Myotis lucifugus ENSMLUG000000307083 retrocopies
Macaca mulatta ENSMMUG000000201081 retrocopy
Ochotona princeps ENSOPRG000000114431 retrocopy
Pteropus vampyrus ENSPVAG00000017436 1 retrocopy
retro_pvam_899 ,



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