RetrogeneDB ID: | retro_cfam_433 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:60600293..60600723(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD5 | ||
Ensembl ID: | ENSCAFG00000019357 | ||
Aliases: | None | ||
Description: | potassium channel tetramerization domain containing 5 [Source:HGNC Symbol;Acc:21423] |
Percent Identity: | 80.27 % |
Parental protein coverage: | 61.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GLGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRD-PKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF |
GLGALAQ.P..VSKWVRLNVGGTY.LTT.QT.CRD.P......LCQA.PDLDSDKDETGA.L.DRDP.YF | |
Retrocopy | GLGALAQDPRRVSKWVRLNVGGTYLLTTWQTPCRD<PEILPSCLCQANPDLDSDKDETGAHLVDRDP-YF |
Parental | GPVLNYLRHG-KLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEEL |
GP.LNYL..G.K.VINKDLAEEGVLE..EFYNITSLIKLVKDKI.ERDSKTSQVPVKHVY.VLQ.Q.EEL | |
Retrocopy | GPALNYLSSG<KRVINKDLAEEGVLEGREFYNITSLIKLVKDKIPERDSKTSQVPVKHVYHVLQRQVEEL |
Parental | TQMVSTM |
TQMVST. | |
Retrocopy | TQMVSTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 13 .69 RPM |
SRP017611_brain | 0 .00 RPM | 3 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .61 RPM |
SRP017611_liver | 0 .00 RPM | 3 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019357 | 1 retrocopy |
retro_cfam_433 ,
|
Homo sapiens | ENSG00000167977 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010496 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016596 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006867 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006647 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000008237 | 1 retrocopy |