RetrogeneDB ID: | retro_itri_950 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393348.1:4342000..4342444(+) | ||
Located in intron of: | ENSSTOG00000007526 | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020317 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD5 | ||
Ensembl ID: | ENSSTOG00000006647 | ||
Aliases: | None | ||
Description: | potassium channel tetramerization domain containing 5 [Source:HGNC Symbol;Acc:21423] |
Percent Identity: | 94.59 % |
Parental protein coverage: | 98.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKH |
T......RDPTYFG.VLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE.DSKTSQVPVKH | |
Retrocopy | TPTWTLTRDPTYFGSVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRELDSKTSQVPVKH |
Parental | VYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEKAKI |
VYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEKAKI | |
Retrocopy | VYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEKAKI |
Parental | LQERGSRM |
LQERGSRM | |
Retrocopy | LQERGSRM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019357 | 1 retrocopy | |
Homo sapiens | ENSG00000167977 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010496 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016596 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006867 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006647 | 8 retrocopies |
retro_itri_1562, retro_itri_1690, retro_itri_1692, retro_itri_1761, retro_itri_1779, retro_itri_1844, retro_itri_1889, retro_itri_950 ,
|
Tursiops truncatus | ENSTTRG00000008237 | 1 retrocopy |