RetrogeneDB ID: | retro_itri_1690 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393640.1:404990..405435(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD5 | ||
Ensembl ID: | ENSSTOG00000006647 | ||
Aliases: | None | ||
Description: | potassium channel tetramerization domain containing 5 [Source:HGNC Symbol;Acc:21423] |
Percent Identity: | 74.83 % |
Parental protein coverage: | 99.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ETGAYLIDR-DPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPV |
E.G.YL.DR.DP...G.VLN.LRHGKLV..KDLAE.GV..E.EFY.IT.LIKLVKDKIRERDSKTSQVPV | |
Retrocopy | ESGSYLFDR<DPRDLGAVLNSLRHGKLVLKKDLAE*GVWKEVEFYKIT*LIKLVKDKIRERDSKTSQVPV |
Parental | KHVYRV-LQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEK |
KH.Y.V..QCQEE..TQMVSTM....KFEQLV.IGSSYNYGNED.A..L..VSK.L.NTPYGTTSEPSE. | |
Retrocopy | KHAYPV<VQCQEEGFTQMVSTMPGD*KFEQLVRIGSSYNYGNEDMAQLLRMVSKKLPNTPYGTTSEPSEE |
Parental | AKILQERGSRM |
.KIL.ERGSRM | |
Retrocopy | TKILLERGSRM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019357 | 1 retrocopy | |
Homo sapiens | ENSG00000167977 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010496 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016596 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006867 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006647 | 8 retrocopies |
retro_itri_1562, retro_itri_1690 , retro_itri_1692, retro_itri_1761, retro_itri_1779, retro_itri_1844, retro_itri_1889, retro_itri_950,
|
Tursiops truncatus | ENSTTRG00000008237 | 1 retrocopy |