RetrogeneDB ID: | retro_itri_1844 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394049.1:89781..90226(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD5 | ||
Ensembl ID: | ENSSTOG00000006647 | ||
Aliases: | None | ||
Description: | potassium channel tetramerization domain containing 5 [Source:HGNC Symbol;Acc:21423] |
Percent Identity: | 76.16 % |
Parental protein coverage: | 99.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ETGAYLIDR-DPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPV |
E.GAYL.DR.DP...G.VLN.LRH.KLV..KDLAEEGV.EE.EFYNITSLIKLVKDKIRE.DSKTSQVP. | |
Retrocopy | ESGAYLFDR<DPRDLGAVLNSLRHEKLVLKKDLAEEGVWEEVEFYNITSLIKLVKDKIREGDSKTSQVPM |
Parental | KHVYRVL-QCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEK |
KHVY.VL..CQ.E..TQ..S.M..GWKFEQLV.IGSSYNYGNED.A..L.VVSK.L.NT.YGTTSEPSE. | |
Retrocopy | KHVYPVL<KCQKEGFTQIMSIMPGGWKFEQLVRIGSSYNYGNEDMAQLLRVVSKKLPNTRYGTTSEPSEE |
Parental | AKILQERGSRM |
.KILQERGSRM | |
Retrocopy | TKILQERGSRM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019357 | 1 retrocopy | |
Homo sapiens | ENSG00000167977 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010496 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016596 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006867 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006647 | 8 retrocopies |
retro_itri_1562, retro_itri_1690, retro_itri_1692, retro_itri_1761, retro_itri_1779, retro_itri_1844 , retro_itri_1889, retro_itri_950,
|
Tursiops truncatus | ENSTTRG00000008237 | 1 retrocopy |