RetrogeneDB ID: | retro_itri_1562 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393541.1:54967..55412(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD5 | ||
Ensembl ID: | ENSSTOG00000006647 | ||
Aliases: | None | ||
Description: | potassium channel tetramerization domain containing 5 [Source:HGNC Symbol;Acc:21423] |
Percent Identity: | 83.44 % |
Parental protein coverage: | 99.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSK-TSQVPV |
E.GAYLIDRDP...G.VLN.LRHGKLV.NKDL.EEGV.EEAEFYNITSL.KLVKDKIRE.DSK.TSQVPV | |
Retrocopy | ERGAYLIDRDPKELGAVLNSLRHGKLVLNKDLTEEGVWEEAEFYNITSLTKLVKDKIREGDSK<TSQVPV |
Parental | KHVYRV-LQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEK |
KHVY.V..QCQEE..TQMV.TM.DGWKFEQLVSIGSSYNYGNEDQAEFL.VVSK.L.NTPYGTTSEPSE. | |
Retrocopy | KHVYPV<VQCQEEGFTQMVFTMPDGWKFEQLVSIGSSYNYGNEDQAEFLLVVSKKLPNTPYGTTSEPSEE |
Parental | AKILQERGSRM |
AK..QERGSRM | |
Retrocopy | AKFFQERGSRM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019357 | 1 retrocopy | |
Homo sapiens | ENSG00000167977 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010496 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016596 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006867 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006647 | 8 retrocopies |
retro_itri_1562 , retro_itri_1690, retro_itri_1692, retro_itri_1761, retro_itri_1779, retro_itri_1844, retro_itri_1889, retro_itri_950,
|
Tursiops truncatus | ENSTTRG00000008237 | 1 retrocopy |