RetrogeneDB ID: | retro_cfam_752 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:21136865..21137358(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000010127 | ||
Aliases: | SNRPN, SNURF | ||
Description: | Small nuclear ribonucleoprotein-associated protein [Source:UniProtKB/TrEMBL;Acc:E2RPQ0] |
Percent Identity: | 58.52 % |
Parental protein coverage: | 70.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | LRGENLVSMTVEGPPPKDTGIARVPLAG-AAGGPGVGRAAGRG-VPAGVPIP-QAPAGLAGPVRGVGGPS |
LRG.NLV.MTVEG.PPKDTGIA.V.LA..AA...G..RAA....V.A.V..P.Q.PAGLA.P...VGG.S | |
Retrocopy | LRG-NLVLMTVEGSPPKDTGIA*VALAE<AARDSGISRAAAQK<VLASVLVP<QDPAGLARPG*EVGGLS |
Parental | QQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVG-RATPPPGIMAPPPGMRPP-MGPPIGL- |
QQVMTPQ.RG..AA...AAT.S.A..PTQYPP..G.PP.P.G.RA.P..G.M..P.G..PP.MG.P.G.. | |
Retrocopy | QQVMTPQRRGIIAASSSAATVSTARVPTQYPPSHGGPPPPKG>RALP--GMMGQPLGLKPP<MGRPVGI< |
Parental | PPARGTPIGMPPPGMRPPPPGIRGP-PPPGMRPPRP |
PP...T..GM.PPGM...PPG..GP.PP.G...PRP | |
Retrocopy | PPG*ATLMGMSPPGMQGSPPGKGGP<PPLGKHSPRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 274 .63 RPM |
SRP017611_brain | 0 .00 RPM | 300 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 99 .58 RPM |
SRP017611_liver | 0 .00 RPM | 11 .67 RPM |