RetrogeneDB ID: | retro_amel_839 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192677.1:314327..314938(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPN | ||
Ensembl ID: | ENSAMEG00000007034 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] |
Percent Identity: | 66.2 % |
Parental protein coverage: | 86.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | IGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL |
.GT.KAF.KH.NLILCDCDEFRKIKPK..KQP..E.KRV..LV.L.GENLVSMTV.G....DTGI..VPL | |
Retrocopy | VGTLKAFAKHINLILCDCDEFRKIKPKHLKQPHHEAKRVWSLVWLHGENLVSMTVGGXXXXDTGISWVPL |
Parental | AGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGP-SQQVMTPQGRGTVAAA-AVAATASIAGAP |
AGAAG....G....R....GVP...A..GLAGPV.GVGGP.SQQ..TP.GRGTVAA..AVAA.AS.AGAP | |
Retrocopy | AGAAG----GPGVVRAAGGGVP---AGVGLAGPVWGVGGP<SQQERTPPGRGTVAAV<AVAAPASSAGAP |
Parental | TQYPPGRGTPPTPVGRA-TPPPGIMAPPPGMRPPMGPPIGLPPARG-TPIGMPPPGMRPPPPGIRGPPPP |
..Y.P..GTPP...G.A.TPPPGI.APPPG.R.P.GPP...P...G.TP.G.PPPGMRP.PPGIRGP.PP | |
Retrocopy | AHYLPTWGTPPASEGQA<TPPPGIVAPPPGRRLPAGPPVVVPLLEG<TPLGTPPPGMRPSPPGIRGPLPP |
Parental | GMRPPR |
.M.PPR | |
Retrocopy | RMHPPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |