RetrogeneDB ID: | retro_ocun_488 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:85218666..85219386(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023527 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPN | ||
Ensembl ID: | ENSOCUG00000003532 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] |
Percent Identity: | 92.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV |
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV | |
Retrocopy | MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV |
Parental | LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ |
LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ | |
Retrocopy | LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ |
Parental | VMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPVGIMAPPPGMRPPMGPPIGLPPAR |
VMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPP.GIMAPPPGMRPPMGPPIGLPPAR | |
Retrocopy | VMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPP-GIMAPPPGMRPPMGPPIGLPPAR |
Parental | GTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP |
GTPIGMP................PGMRPPRP | |
Retrocopy | GTPIGMPXXXXXXXXXXXXXXXXPGMRPPRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 43 .43 RPM | 119 .32 RPM |
SRP017611_kidney | 4 .05 RPM | 15 .30 RPM |
SRP017611_liver | 1 .00 RPM | 3 .70 RPM |