RetrogeneDB ID: | retro_ocun_689 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:33067040..33067496(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPN | ||
Ensembl ID: | ENSOCUG00000003532 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] |
Percent Identity: | 67.08 % |
Parental protein coverage: | 65.98 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRG |
K..KMLQHI.YR.RCILQ.G.I.IG.FKAFDKHMN.I.CD.DEFRKIKP.NAKQPE.E....L.LVLL.G | |
Retrocopy | KECKMLQHINYRIRCILQGG*IVIGIFKAFDKHMN*IFCDSDEFRKIKPTNAKQPEHED---LVLVLLCG |
Parental | ENLVSMTVEGPPPKDTGIARVPLAGAAGGPGV-GRAAGRGVPAGVPIPQAPAGLAGPVRGVGG-PSQQVM |
ENLV....EGP.P.DTG.A..P..G.AGGPGV..RAA.RG.PA.V.IPQ..A.L.GP.......PS.Q.M | |
Retrocopy | ENLV---FEGPVPEDTGMAWIPRPGVAGGPGV>SRAADRGGPAEVTIPQPLARLSGPI*EIES<PSLQTM |
Parental | TPQGRGTVAAAAVAATASIAG |
.PQGRGT.AA.AVAATASIAG | |
Retrocopy | -PQGRGTIAAVAVAATASIAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 119 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .30 RPM |
SRP017611_liver | 0 .00 RPM | 3 .70 RPM |