RetrogeneDB ID: | retro_cfam_760 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:35732820..35733291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007091 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRAPPC4 | ||
Ensembl ID: | ENSCAFG00000012383 | ||
Aliases: | None | ||
Description: | trafficking protein particle complex 4 [Source:HGNC Symbol;Acc:19943] |
Percent Identity: | 92.99 % |
Parental protein coverage: | 71.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSS |
VLAINGVDVNGK.TADGKEVL.YL.NPANYPVSIR.GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSS | |
Retrocopy | VLAINGVDVNGKFTADGKEVLGYLSNPANYPVSIRSGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSS |
Parental | GIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL |
G.EMLETD..KLHCFQTLTGIKF.VLA.PRQAGIDSLL.KIYEIYSDFALKNPFYSLEMPIRCELFDQNL | |
Retrocopy | GTEMLETDSCKLHCFQTLTGIKFAVLANPRQAGIDSLLQKIYEIYSDFALKNPFYSLEMPIRCELFDQNL |
Parental | KLALEVAEKAGTFGPGS |
.LALEVAEKAGTFGPGS | |
Retrocopy | ELALEVAEKAGTFGPGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 19 .28 RPM |
SRP017611_brain | 0 .00 RPM | 12 .78 RPM |
SRP017611_kidney | 0 .07 RPM | 29 .52 RPM |
SRP017611_liver | 0 .00 RPM | 13 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012383 | 1 retrocopy |
retro_cfam_760 ,
|
Callithrix jacchus | ENSCJAG00000013703 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007885 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004759 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014340 | 1 retrocopy |