RetrogeneDB ID: retro_mluc_1438

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429838:1950964..1951406(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TRAPPC4
• Ensembl ID: ENSMLUG00000004759
• Aliases: None
• Description: None

Sequence

>retro_mluc_1438
AATGGCAAGTACACAGCTGGTAAGAAAGAAGTGCTGGAGTACATGGGCAGCCCTGCCAACTACCCAGTGTCCATTGCATT
AGGCCAGGCCCACCTCACCTCCAATGAGAAGCTCATCTGGCCTCCATGTTCCACTCGCTGTTTGAAAAACAGCTCCCAGC
TTTCTCCCAAACAGGGCAGCTAAGGCACTGAGATGCTGGAGACAGACACATTCAAACTGCACTGCTTCTCTAGACAGATA
GGGATCAGGTTTGTGGTGCTGGCAGACCCTAGGCAAGCGCGATAGATTTTCTCCTCCAAAAGATTTATGAGATTTACTAA
GACTTTGTCCTCAAGAACCCATTCTACTCCCTGGAAATGCCCATCAGGTGTGAGCTGTTTGACAAGAACCTGAAGTTAGT
CCTGGGGTGTCAGAGAAGGTTGGAAGTTTTGGACCTGGGTCA

Alignment

ORF - retro_mluc_1438 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75. %
• Parental protein coverage: 67.58 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  NGKYTADGKEVLEYLGNPANYPVSVRFGRPRLTSNEKLM-LASMFHSLFAI-GSQLSPEQGSSGIEMLET
          NGKYTA..KEVLEY.G.PANYPVS...G...LTSNEKL..LASMFHSLF....SQLSP.QGS.G.EMLET
Retrocopy NGKYTAGKKEVLEYMGSPANYPVSIALGQAHLTSNEKLI<LASMFHSLFEK>SSQLSPKQGS*GTEMLET

Parental  DTFKLHCFQTLTGIKFVVLADPRQA-GIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFEQNLKLAL-E
          DTFKLHCF....GI.FVVLADPRQA..ID.LL.KIYEIY.DF.LKNPFYSLEMPIRCELF..NLKL.L..
Retrocopy DTFKLHCFSRQIGIRFVVLADPRQA<AIDFLLQKIYEIY*DFVLKNPFYSLEMPIRCELFDKNLKLVL<G

Parental  VAEKAGTFGPGS
          V.EK.G.FGPGS
Retrocopy VSEKVGSFGPGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1438 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012383	1 retrocopy	retro_cfam_760,
Callithrix jacchus	ENSCJAG00000013703	1 retrocopy	retro_cjac_450,
Dasypus novemcinctus	ENSDNOG00000007885	1 retrocopy	retro_dnov_46,
Myotis lucifugus	ENSMLUG00000004759	1 retrocopy	retro_mluc_1438 ,
Ictidomys tridecemlineatus	ENSSTOG00000014340	1 retrocopy	retro_itri_1252,