RetrogeneDB ID: | retro_dnov_46 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_36882:54387..55047(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000014222 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000007885 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAIFSVFVVNKAGGLIYQLDSYSPRAEAEKTFSFPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMD |
MAIFSVFVVNKAGGLIYQLDSY.PRAEAEKTFSFPLDLLLKLHDERVLVAFGQRDG.RVGHAVLAINGMD | |
Retrocopy | MAIFSVFVVNKAGGLIYQLDSYTPRAEAEKTFSFPLDLLLKLHDERVLVAFGQRDGLRVGHAVLAINGMD |
Parental | VNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD |
VNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD | |
Retrocopy | VNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD |
Parental | TFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAE |
TFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAE | |
Retrocopy | TFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAE |
Parental | KAGTFGPGS |
KAGTFGPGS | |
Retrocopy | KAGTFGPGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .58 RPM | 166 .85 RPM |
SRP012922_cerebellum | 0 .00 RPM | 39 .04 RPM |
SRP012922_heart | 0 .23 RPM | 39 .91 RPM |
SRP012922_kidney | 0 .27 RPM | 135 .25 RPM |
SRP012922_liver | 0 .15 RPM | 117 .65 RPM |
SRP012922_lung | 0 .31 RPM | 133 .94 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 39 .81 RPM |
SRP012922_spleen | 0 .34 RPM | 117 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012383 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013703 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007885 | 1 retrocopy |
retro_dnov_46 ,
|
Myotis lucifugus | ENSMLUG00000004759 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014340 | 1 retrocopy |