RetrogeneDB ID: | retro_itri_1252 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393414.1:3293529..3293862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000019914 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRAPPC4 | ||
Ensembl ID: | ENSSTOG00000014340 | ||
Aliases: | None | ||
Description: | trafficking protein particle complex 4 [Source:HGNC Symbol;Acc:19943] |
Percent Identity: | 90.09 % |
Parental protein coverage: | 50.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYS |
L..A.....LFAIGSQLSPEQGSS.IEMLETDTFKLHCFQTLTGIKFVVLADPRQAGID.LLRKIYEIYS | |
Retrocopy | LRTARWHPGLFAIGSQLSPEQGSSDIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDFLLRKIYEIYS |
Parental | DFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPGS |
DFALKNPFYSLEMPIRCELFD.NLKLALEVAEKAGTFGP.S | |
Retrocopy | DFALKNPFYSLEMPIRCELFDHNLKLALEVAEKAGTFGPES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012383 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013703 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007885 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004759 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014340 | 1 retrocopy |
retro_itri_1252 ,
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