RetrogeneDB ID: | retro_cfam_765 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:55985984..55987331(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CS | ||
Ensembl ID: | ENSCAFG00000000115 | ||
Aliases: | None | ||
Description: | Citrate synthase [Source:UniProtKB/TrEMBL;Acc:F1PV92] |
Percent Identity: | 93.57 % |
Parental protein coverage: | 96.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYET |
.KNASCLVLAA.HASASSTNLKDILADLIPK.QARIKTFRQQHGKTVV.QITVDMMYGGMRGMKGLVYET | |
Retrocopy | AKNASCLVLAAWHASASSTNLKDILADLIPKAQARIKTFRQQHGKTVVDQITVDMMYGGMRGMKGLVYET |
Parental | SVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALPSHVV |
SVLDPDE.I.FRGYSIPECQKLL.KAKGGEEPLPEGLFWLLVT.QIPTEEQVSWLSKEWAKRAALPSHVV | |
Retrocopy | SVLDPDEDIHFRGYSIPECQKLLLKAKGGEEPLPEGLFWLLVTRQIPTEEQVSWLSKEWAKRAALPSHVV |
Parental | TMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYR |
TMLDNFPTNLHPMSQLSAAITALNSESNFARA..EGI.RTKYWELIYEDCMDLI.K.PCVAAKIY.NLY. | |
Retrocopy | TMLDNFPTNLHPMSQLSAAITALNSESNFARA--EGISRTKYWELIYEDCMDLITKIPCVAAKIYQNLY* |
Parental | EGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA |
EGSSIGAIDSKLDWSHNFTN.LGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA | |
Retrocopy | EGSSIGAIDSKLDWSHNFTNILGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA |
Parental | MNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQRE |
.NGLAGPLHGL.NQEVLVWLTQLQKEVGKDVSDEKLRD.IWNT.NSGRVVPGYGHAVLRKTDPRYTCQ.E | |
Retrocopy | VNGLAGPLHGLENQEVLVWLTQLQKEVGKDVSDEKLRD*IWNTPNSGRVVPGYGHAVLRKTDPRYTCQQE |
Parental | FALKHLPHDSMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGV |
FALKHLPHDSMFKLVAQLYKIVPNVLLEQGKAKNPWP.VDAHSGVLLQYY.MTE.NYYTVLFGVSRALGV | |
Retrocopy | FALKHLPHDSMFKLVAQLYKIVPNVLLEQGKAKNPWPSVDAHSGVLLQYYSMTEKNYYTVLFGVSRALGV |
Parental | LAQLIWSRALGFPLERPKSMSTDGLMKFVDS |
L.QLIWS.ALGFPLERPKSMSTDG..K.VDS | |
Retrocopy | LIQLIWS*ALGFPLERPKSMSTDGPVKLVDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 91 .05 RPM |
SRP017611_brain | 0 .24 RPM | 109 .24 RPM |
SRP017611_kidney | 0 .13 RPM | 120 .32 RPM |
SRP017611_liver | 0 .00 RPM | 26 .76 RPM |