Parental gene: | CS, ENSG00000062485 |
| Aliases: | None |
| Description: | citrate synthase [Source:HGNC Symbol;Acc:2422] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 12:56665482..56694176(-) |
>ENSG00000062485
ATGGCTTTACTTACTGCGGCCGCCCGGCTCTTGGGAACCAAGAATGCATCTTGTCTTGTTCTTGCAGCCCGGCATGCCAG
TGCTTCCTCCACGAATTTGAAAGACATATTGGCTGACCTGATACCTAAGGAGCAGGCCAGAATTAAGACTTTCAGGCAGC
AACATGGCAAGACGGTGGTGGGCCAAATCACTGTGGACATGATGTATGGTGGCATGAGAGGCATGAAGGGATTGGTCTAT
GAAACATCAGTTCTTGATCCTGATGAGGGCATCCGTTTCCGAGGCTTTAGTATCCCTGAATGCCAGAAACTGCTACCCAA
GGCTAAGGGTGGGGAAGAACCCCTGCCTGAGGGCTTATTTTGGCTGCTGGTAACTGGACATATCCCAACAGAGGAACAGG
TATCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTGCCTTCCCATGTGGTCACCATGCTGGACAACTTTCCCACC
AATCTACACCCCATGTCTCAGCTCAGTGCAGCTGTTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCACA
GGGTATCAGCCGAACCAAGTACTGGGAGTTGATTTATGAAGACTCTATGGATCTAATCGCAAAGCTACCTTGTGTTGCAG
CAAAGATCTACCGAAATCTCTACAGAGAAGGCAGCGGTATTGGGGCCATTGACTCTAACCTGGACTGGTCTCACAATTTC
ACCAACATGTTAGGCTATACTGATCATCAGTTCACTGAGCTCACGCGCCTGTACCTCACCATCCACAGTGACCATGAGGG
TGGCAATGTAAGTGCCCATACCAGCCATTTGGTGGGCAGTGCCCTTTCCGACCCTTACCTGTCCTTTGCAGCAGCCATGA
ACGGGCTGGCAGGGCCTCTCCATGGACTGGCAAATCAGGAAGTGCTTGTCTGGCTAACACAGCTGCAGAAGGAAGTTGGC
AAAGATGTGTCAGATGAGAAGTTACGAGACTACATCTGGAACACACTCAACTCAGGACGGGTTGTTCCAGGCTATGGCCA
TGCAGTACTAAGGAAGACTGATCCGCGATATACCTGTCAGCGAGAGTTTGCTCTGAAACACCTGCCTAATGACCCCATGT
TTAAGTTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCCTCTTAGAGCAGGGTAAAGCCAAGAATCCTTGGCCCAAT
GTAGATGCTCACAGTGGGGTGCTGCTCCAGTATTATGGCATGACGGAGATGAATTACTACACGGTCCTGTTTGGGGTGTC
ACGAGCATTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCTTAGGCTTCCCTCTAGAAAGGCCCAAGTCCATGAGCA
CAGAGGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAA
ATGGCTTTACTTACTGCGGCCGCCCGGCTCTTGGGAACCAAGAATGCATCTTGTCTTGTTCTTGCAGCCCGGCATGCCAG
TGCTTCCTCCACGAATTTGAAAGACATATTGGCTGACCTGATACCTAAGGAGCAGGCCAGAATTAAGACTTTCAGGCAGC
AACATGGCAAGACGGTGGTGGGCCAAATCACTGTGGACATGATGTATGGTGGCATGAGAGGCATGAAGGGATTGGTCTAT
GAAACATCAGTTCTTGATCCTGATGAGGGCATCCGTTTCCGAGGCTTTAGTATCCCTGAATGCCAGAAACTGCTACCCAA
GGCTAAGGGTGGGGAAGAACCCCTGCCTGAGGGCTTATTTTGGCTGCTGGTAACTGGACATATCCCAACAGAGGAACAGG
TATCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTGCCTTCCCATGTGGTCACCATGCTGGACAACTTTCCCACC
AATCTACACCCCATGTCTCAGCTCAGTGCAGCTGTTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCACA
GGGTATCAGCCGAACCAAGTACTGGGAGTTGATTTATGAAGACTCTATGGATCTAATCGCAAAGCTACCTTGTGTTGCAG
CAAAGATCTACCGAAATCTCTACAGAGAAGGCAGCGGTATTGGGGCCATTGACTCTAACCTGGACTGGTCTCACAATTTC
ACCAACATGTTAGGCTATACTGATCATCAGTTCACTGAGCTCACGCGCCTGTACCTCACCATCCACAGTGACCATGAGGG
TGGCAATGTAAGTGCCCATACCAGCCATTTGGTGGGCAGTGCCCTTTCCGACCCTTACCTGTCCTTTGCAGCAGCCATGA
ACGGGCTGGCAGGGCCTCTCCATGGACTGGCAAATCAGGAAGTGCTTGTCTGGCTAACACAGCTGCAGAAGGAAGTTGGC
AAAGATGTGTCAGATGAGAAGTTACGAGACTACATCTGGAACACACTCAACTCAGGACGGGTTGTTCCAGGCTATGGCCA
TGCAGTACTAAGGAAGACTGATCCGCGATATACCTGTCAGCGAGAGTTTGCTCTGAAACACCTGCCTAATGACCCCATGT
TTAAGTTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCCTCTTAGAGCAGGGTAAAGCCAAGAATCCTTGGCCCAAT
GTAGATGCTCACAGTGGGGTGCTGCTCCAGTATTATGGCATGACGGAGATGAATTACTACACGGTCCTGTTTGGGGTGTC
ACGAGCATTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCTTAGGCTTCCCTCTAGAAAGGCCCAAGTCCATGAGCA
CAGAGGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 50 .49 RPM |
| bodymap2_lung | 116 .03 RPM |
| bodymap2_breast | 292 .34 RPM |
| bodymap2_adipose | 180 .81 RPM |
| bodymap2_adrenal | 123 .00 RPM |
| bodymap2_skeletal_muscle | 302 .85 RPM |
| bodymap2_thyroid | 134 .13 RPM |
| bodymap2_prostate | 141 .23 RPM |
| bodymap2_colon | 128 .08 RPM |
| bodymap2_testis | 80 .33 RPM |
| bodymap2_brain | 110 .78 RPM |
| bodymap2_heart | 403 .19 RPM |
| bodymap2_white_blood_cells | 149 .90 RPM |
| bodymap2_lymph_node | 119 .02 RPM |
| bodymap2_ovary | 124 .88 RPM |
| bodymap2_kidney | 174 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004371 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000000115 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000397 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011275 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010907 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000012035 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000009096 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005657 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000017659 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000002483 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000005683 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017514 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007216 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004654 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000023520 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000010093 | ortholog_one2many | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000021091 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000022858 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006425 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004483 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1972 | 95.72 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_3621 | 73.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000062485 retrocopies