RetrogeneDB ID: | retro_cfam_835 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:53603331..53604033(-) | ||
Located in intron of: | ENSCAFG00000025291 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCCHC17 | ||
Ensembl ID: | ENSCAFG00000011131 | ||
Aliases: | None | ||
Description: | zinc finger, CCHC domain containing 17 [Source:HGNC Symbol;Acc:30246] |
Percent Identity: | 86.75 % |
Parental protein coverage: | 97.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK |
MNSGRPETME.LPALY.IFQGE.AMVTDYGAFIKIPGC.KQGLVHRTHMSSCR.DKPSEIVD.G.KVWVK | |
Retrocopy | MNSGRPETMEHLPALYIIFQGEIAMVTDYGAFIKIPGCQKQGLVHRTHMSSCRMDKPSEIVDDGGKVWVK |
Parental | LIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKG |
LIGREMKNDRIKVS.SMKV.NQGTGKDLDPNNVIIEQEERR..SFQDYTGQKITLEAVLNTTCKKCGCKG | |
Retrocopy | LIGREMKNDRIKVSISMKVINQGTGKDLDPNNVIIEQEERRLQSFQDYTGQKITLEAVLNTTCKKCGCKG |
Parental | HFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTRNSSRKRKKEKKKKKHRDRKSSDSDSSDSES |
HFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPD.TRNSS...........H.DRK.S.SDSSDSES | |
Retrocopy | HFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDSTRNSSXXXXXXXXXXXHGDRKLSESDSSDSES |
Parental | DTGKRARHTSKDSKAAKKKKKKKK |
DT.KRARHTSKDSKAAKKKK.... | |
Retrocopy | DTSKRARHTSKDSKAAKKKKQHRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 21 .29 RPM |
SRP017611_brain | 0 .24 RPM | 31 .60 RPM |
SRP017611_kidney | 3 .96 RPM | 10 .96 RPM |
SRP017611_liver | 1 .09 RPM | 4 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017710 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016818 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011131 | 2 retrocopies |
retro_cfam_485, retro_cfam_835 ,
|
Callithrix jacchus | ENSCJAG00000006259 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000509 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000004128 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007421 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015364 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000594 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017082 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015442 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028772 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013749 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007944 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003825 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014870 | 2 retrocopies |