RetrogeneDB ID: | retro_etel_1280 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_240229:6803..7235(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCCHC17 | ||
Ensembl ID: | ENSETEG00000007421 | ||
Aliases: | None | ||
Description: | zinc finger, CCHC domain containing 17 [Source:HGNC Symbol;Acc:30246] |
Percent Identity: | 90.28 % |
Parental protein coverage: | 59.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEE |
..GLVH.TH.SSC.VDKP.EIVDVGD.VWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLD.NNVIIEQEE | |
Retrocopy | RRGLVHGTHTSSCGVDKPWEIVDVGDQVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDLNNVIIEQEE |
Parental | RRRRSFQDYTGQKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLI-DEEEEKEEAKSAELEKPDPE |
RRR.S.QDYTGQKITLEAVLNTTC.KCGC.GHFAKDC.MQPGGTKYSLI.DEEEEKEEAKSAELEKPDPE | |
Retrocopy | RRRQSLQDYTGQKITLEAVLNTTCNKCGCEGHFAKDCCMQPGGTKYSLIPDEEEEKEEAKSAELEKPDPE |
Parental | KNSS |
KNSS | |
Retrocopy | KNSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017710 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016818 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011131 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000006259 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000509 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007421 | 1 retrocopy |
retro_etel_1280 ,
|
Myotis lucifugus | ENSMLUG00000000594 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017082 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015442 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028772 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007944 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014870 | 2 retrocopies |