RetrogeneDB ID: | retro_cfam_981 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:17010509..17010866(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM230 | ||
Ensembl ID: | ENSCAFG00000006039 | ||
Aliases: | None | ||
Description: | transmembrane protein 230 [Source:HGNC Symbol;Acc:15876] |
Percent Identity: | 60.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKSPPKIPYK-AIALATV-LFLIGAFLIIIGSLLLA |
M..S.TNL.TGIPSSKVK.SRLSSTDD.YIDL.FKK......Y...I.L.....FLI...L...G..L.. | |
Retrocopy | MILSSTNLVTGIPSSKVKFSRLSSTDDDYIDLEFKKNIHGVTYE<GIVLFLIDVFLIIGCLLLAG-YLKK |
Parental | GYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSY-DDIPDFDD |
G....G.AD....VLI.GILVFLP..YHL.I.YYASKGY.GYSY..DIPDFDD | |
Retrocopy | GWWAVG-ADQGPSVLITGILVFLPELYHLHISYYASKGYWGYSY>NDIPDFDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 16 .84 RPM |
SRP017611_brain | 0 .00 RPM | 12 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .62 RPM |
SRP017611_liver | 0 .00 RPM | 15 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006063 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006039 | 1 retrocopy |
retro_cfam_981 ,
|
Dasypus novemcinctus | ENSDNOG00000005724 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000023089 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000008611 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002863 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019378 | 1 retrocopy |