RetrogeneDB ID:

retro_pvam_44

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1117:100437..100804(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TMEM230
Ensembl ID:ENSPVAG00000002863
Aliases:None
Description:transmembrane protein 230 [Source:HGNC Symbol;Acc:15876]


Retrocopy-Parental alignment summary:






>retro_pvam_44
TGTGGCTGTGTTATGATGTCATCTTCTACCAACCTGGCTACTGGAATCCCCAGTAGTAAAGTGAAATACTCAGGGCTTTC
CAGCACGGAGGATGGCTGCATTAACCTTCAGTTTAAGAAAAGCCCTCCTAAGATCCCATATGAGGCCATTGTGTCTGCTA
TAGTGCTGTTTTTAATTGGCACCTTTTTCATAGGCTCCCAACTGCTTTTGGGCTATACCAGCAAAGAGGGGGGCAGACTG
GGCCATTCTAGTCCTCGTCATTGGCATTCTAATACTCCTGTTGGGATTTTACTTCCTATGCGTCGCCTACTATGTGTCCA
GAGGCTACAGGGGTTACTCCTACAATGACATTCTAGACTTTGATGAC

ORF - retro_pvam_44 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.8 %
Parental protein coverage: 83.22 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalCQCVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKSPPKIPYKAIALATVLFLIGAFLIIIGSLL
C.CVMM.S.TNLATGIPSSKVKYS.LSST.DG.I.LQFKKSPPKIPY.AI..A.VLFLIG.F...IGS.L
RetrocopyCGCVMMSSSTNLATGIPSSKVKYSGLSSTEDGCINLQFKKSPPKIPYEAIVSAIVLFLIGTF--FIGSQL
ParentalLAGYIS-KGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
L.GY.S.K.GAD.A..VL.IGIL..L.GFY.L..AYY.S.GYRGYSY.DI.DFDD
RetrocopyLLGYTS>KRGADWAILVLVIGILILLLGFYFLCVAYYVSRGYRGYSYNDILDFDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_44 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000060632 retrocopies
Canis familiaris ENSCAFG000000060391 retrocopy
Dasypus novemcinctus ENSDNOG000000057245 retrocopies
Myotis lucifugus ENSMLUG000000230892 retrocopies
Ochotona princeps ENSOPRG000000086111 retrocopy
Pteropus vampyrus ENSPVAG00000002863 1 retrocopy
retro_pvam_44 ,
Ictidomys tridecemlineatus ENSSTOG000000193781 retrocopy



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