RetrogeneDB ID: | retro_chof_1098 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_199266:576..1107(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STRAP | ||
Ensembl ID: | ENSCHOG00000007422 | ||
Aliases: | None | ||
Description: | serine/threonine kinase receptor associated protein [Source:HGNC Symbol;Acc:30796] |
Percent Identity: | 78.77 % |
Parental protein coverage: | 50.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSADDKTVRLWDQATMTEVKSL |
..NYLL.GG..KLL.IYDLNKPEAEPKEISGHTSGIKKAL..SDDKQILS.DD.TV.LW.QATMTE.KSL | |
Retrocopy | NTNYLLIGGEYKLLCIYDLNKPEAEPKEISGHTSGIKKAL*YSDDKQILSVDDETVCLWNQATMTEIKSL |
Parental | NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEK-EFLVAGGEDFKLYK |
NFNMSVSS.EY.PEG.I.VITY..S.AFHSAV.LEPIK.FEA.ATINSASLHP.K..FLVAGGEDFKLY. | |
Retrocopy | NFNMSVSSTEYVPEGGISVITYRQSFAFHSAVGLEPIKLFEALATINSASLHPKK>AFLVAGGEDFKLYG |
Parental | -YDYNNGEELESYKGHF-PIHCVRFSPDGELYASGSENG |
.YDY..G.ELES.KGHF.PIHCVRF...GELYA.GSE.G | |
Retrocopy | <YDYSIGGELESHKGHFGPIHCVRFTLNGELYAGGSEDG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007422 | 2 retrocopies |
retro_chof_1098 , retro_chof_1620,
|
Callithrix jacchus | ENSCJAG00000021593 | 1 retrocopy | |
Homo sapiens | ENSG00000023734 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009939 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013307 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030224 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004160 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015211 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000004334 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000004734 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003466 | 2 retrocopies |