RetrogeneDB ID: | retro_mmul_1695 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:83358808..83359273(-) | ||
Located in intron of: | ENSMMUG00000022451 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STRAP | ||
Ensembl ID: | ENSMMUG00000013307 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.29 % |
Parental protein coverage: | 58.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCS |
KVWDA..GDELMTLAHK.IVKT.DF.QDSNYLLT..QDKLLRIYDLNKPEAEP.E.S.H.S.IKKALWCS | |
Retrocopy | KVWDAIPGDELMTLAHKNIVKTMDFMQDSNYLLTREQDKLLRIYDLNKPEAEPEEVSDHSSDIKKALWCS |
Parental | EDKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAP |
.DKQILS.DDKTVRLWDHATMTE.KSLNFNMS.SSMEYIPEG.ILVITYG.S.AF.S.VSL.PIKSF.AP | |
Retrocopy | VDKQILSSDDKTVRLWDHATMTEMKSLNFNMSASSMEYIPEGDILVITYG*SSAFDSTVSLEPIKSFQAP |
Parental | ATINSASLHPEKEFL |
.TINS.SLH....FL | |
Retrocopy | VTINSESLHLKNFFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 24 .76 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 27 .84 RPM |
SRP007412_cerebellum | 0 .77 RPM | 20 .15 RPM |
SRP007412_heart | 0 .12 RPM | 17 .49 RPM |
SRP007412_kidney | 0 .23 RPM | 17 .61 RPM |
SRP007412_liver | 0 .24 RPM | 12 .79 RPM |
SRP007412_testis | 0 .15 RPM | 18 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3723 |
Pan troglodytes | retro_ptro_2616 |
Pongo abelii | retro_pabe_3134 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007422 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021593 | 1 retrocopy | |
Homo sapiens | ENSG00000023734 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009939 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006119 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013307 | 2 retrocopies |
retro_mmul_1695 , retro_mmul_985,
|
Mus musculus | ENSMUSG00000030224 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004160 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015211 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000004334 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000004734 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003466 | 2 retrocopies |