RetrogeneDB ID: | retro_ttru_581 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2746:110794..111846(-) | ||
Located in intron of: | ENSTTRG00000006617 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STRAP | ||
Ensembl ID: | ENSTTRG00000003466 | ||
Aliases: | None | ||
Description: | serine/threonine kinase receptor associated protein [Source:HGNC Symbol;Acc:30796] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFL-GHKGAVWGATLNK |
MAMR.TPLTCSGHTRPV.DLAF.GITPY.YFL..ACKDGKPML.QGDTGD.IGTFL.G..G...G..... | |
Retrocopy | MAMR*TPLTCSGHTRPVGDLAFNGITPYCYFLMGACKDGKPMLLQGDTGDCIGTFL<GS*GCCLGCNTK* |
Parental | DATKAATAAADF-TAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNCLLTGGQDKLLRIYDLNKPEADPKE |
...........F...KVWDAVSGDE.MTLAHKHIVKTVDFTQDSN.LLTGGQDKLL.IYDLNKPEA.PKE | |
Retrocopy | GRHQSSYSSCRFHSQKVWDAVSGDEWMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLHIYDLNKPEAEPKE |
Parental | ISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAF |
ISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNF.MSVSSMEYIPEGEILVITYGRSIAF | |
Retrocopy | ISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFDMSVSSMEYIPEGEILVITYGRSIAF |
Parental | HSAVSLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGE |
HSAVSLDPIKSFEAPAT.NSASLHPEKEFLVAGGEDFKLYKYDYNS.EEL.SYKGH.GPI.CVRFSPDGE | |
Retrocopy | HSAVSLDPIKSFEAPATNNSASLHPEKEFLVAGGEDFKLYKYDYNSEEELGSYKGHSGPILCVRFSPDGE |
Parental | LYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFPETAEEELEEIASENSDSIYSSTPEV |
LYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFPETAEEELEEIASENSDSI.SSTPEV | |
Retrocopy | LYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKISFPETAEEELEEIASENSDSIDSSTPEV |
Parental | KA |
KA | |
Retrocopy | KA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007422 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021593 | 1 retrocopy | |
Homo sapiens | ENSG00000023734 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009939 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013307 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030224 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004160 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015211 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000004334 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000004734 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003466 | 2 retrocopies |
retro_ttru_581 , retro_ttru_974,
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