Parental gene: | STRAP, ENSPPYG00000004334 |
| Aliases: | None |
| Description: | serine/threonine kinase receptor associated protein [Source:HGNC Symbol;Acc:30796] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:16452203..16473276(+) |
>ENSPPYG00000004334
ATGGCAATGAGACAGACGCCGCTCACCTGCTCTGGCCACACGCGGCCCGTGGTTGATTTGGCCTTCAGTGGCATCACGCC
TTATGGGTATTTCTTAATCAGCGCTTGCAAAGATGGTAAACCTATGCTACGCCAGGGAGATACAGGAGACTGGATTGGAA
CATTTTTGGGTCATAAAGGTGCTGTTTGGGGTGCAACACTGAATAAGGATGCCACCAAAGCAGCTACAGCAGCTGCAGAT
TTCACAGCCAAAGTGTGGGATGCTGTCTCAGGAGATGAATTGATGACCCTGGCTCATAAACACATTGTCAAGACTGTGGA
TTTCACGCAGGATAGTAATTATTTGTTAACCGGGGGACAGGATAAACTGTTACGCATATATGACTTGAACAAACCCGAAG
CAGAACCTAAGGAAATTAGTGGTCATACTTCTGGTATAAAAAAAGCTCTATGGTGCAGTGAGGATAAACAGATTCTTTCT
GCTGATGACAAAACTGTTCGACTTTGGGATCATGCTACTATGACAGAAGTGAAATCTCTAAATTTTAATATGTCTGTTAG
TAGTATGGAATATATTCCTGAGGGAGAGATTTTGGTTATAACTTATGGACGATCTATTGCTTTTCATAGTGCAGTAAGTT
TGGACCCAATTAAATCCTTTGAAGCTCCTGCAACCATCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCA
GGTGGTGAAGATTTTAAACTTTATAAGTATGATTATAATAGCGGAGAAGAATTAGAATCCTACAAGGGACACTTCGGTCC
TATTCACTGTGTCAGATTTAGTCCTGATGGAGAACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTATGGCAAA
CTGTGGTAGGAAAAACATATGGCCTTTGGAAATGTGTGCTTCCTGAAGAAGATAGTGGTGAGCTGGCAAAGCCAAAGATT
GGTTTTCCGGAGACAACAGAAGAAGAGCTAGAAGAAATTGCTTCAAAGAATTCAAATTGCATCTATCCTTCAGCTCCTGA
TGTTAAGGCCTGA
ATGGCAATGAGACAGACGCCGCTCACCTGCTCTGGCCACACGCGGCCCGTGGTTGATTTGGCCTTCAGTGGCATCACGCC
TTATGGGTATTTCTTAATCAGCGCTTGCAAAGATGGTAAACCTATGCTACGCCAGGGAGATACAGGAGACTGGATTGGAA
CATTTTTGGGTCATAAAGGTGCTGTTTGGGGTGCAACACTGAATAAGGATGCCACCAAAGCAGCTACAGCAGCTGCAGAT
TTCACAGCCAAAGTGTGGGATGCTGTCTCAGGAGATGAATTGATGACCCTGGCTCATAAACACATTGTCAAGACTGTGGA
TTTCACGCAGGATAGTAATTATTTGTTAACCGGGGGACAGGATAAACTGTTACGCATATATGACTTGAACAAACCCGAAG
CAGAACCTAAGGAAATTAGTGGTCATACTTCTGGTATAAAAAAAGCTCTATGGTGCAGTGAGGATAAACAGATTCTTTCT
GCTGATGACAAAACTGTTCGACTTTGGGATCATGCTACTATGACAGAAGTGAAATCTCTAAATTTTAATATGTCTGTTAG
TAGTATGGAATATATTCCTGAGGGAGAGATTTTGGTTATAACTTATGGACGATCTATTGCTTTTCATAGTGCAGTAAGTT
TGGACCCAATTAAATCCTTTGAAGCTCCTGCAACCATCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCA
GGTGGTGAAGATTTTAAACTTTATAAGTATGATTATAATAGCGGAGAAGAATTAGAATCCTACAAGGGACACTTCGGTCC
TATTCACTGTGTCAGATTTAGTCCTGATGGAGAACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTATGGCAAA
CTGTGGTAGGAAAAACATATGGCCTTTGGAAATGTGTGCTTCCTGAAGAAGATAGTGGTGAGCTGGCAAAGCCAAAGATT
GGTTTTCCGGAGACAACAGAAGAAGAGCTAGAAGAAATTGCTTCAAAGAATTCAAATTGCATCTATCCTTCAGCTCCTGA
TGTTAAGGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 53 .91 RPM |
| SRP007412_cerebellum | 38 .91 RPM |
| SRP007412_heart | 32 .03 RPM |
| SRP007412_kidney | 35 .73 RPM |
| SRP007412_liver | 37 .30 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007422 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000021593 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000023734 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009939 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013307 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000030224 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004160 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015211 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000001598 | within_species_paralog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000004734 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003466 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2005 | 86.76 | 58.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3134 | 80.00 | 59.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3212 | 79.52 | 59.43 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004334 retrocopies