RetrogeneDB ID: | retro_chof_139 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_3158:40725..41000(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSCHOG00000009158 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 76.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAYRGQGQK-VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK |
..Y.G.GQK.VQ.V..QPINLIFRYLQ.RS.I.VWLYEQ..MRIE.C..GFDEYMNLVLDDAEEIHSKTK | |
Retrocopy | VTYSGKGQK<VQEVIAQPINLIFRYLQIRSWI*VWLYEQLSMRIEDCVTGFDEYMNLVLDDAEEIHSKTK |
Parental | SRKQLGRIMLKGDNITLLQSVSN |
.RK.L..IML.GDN.TLLQSVSN | |
Retrocopy | ARKPLSGIMLTGDNFTLLQSVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |