RetrogeneDB ID:

retro_mmur_453

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_323:41577..41767(+)
Located in intron of:ENSMICG00000009061
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SNRPE
Ensembl ID:ENSMICG00000015537
Aliases:None
Description:small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161]


Retrocopy-Parental alignment summary:






>retro_mmur_453
AGATCCTGGATTCAGGTATGGCTCTGTGAGAGGTGAATATGCAGCTAGAGGGCTGTATCATTGGTTTTGATGAGCATATG
AACCTTGTATCAGATGATGGACAAGAGATTCATTGTAAAAGTCAAGAAAACAAGTGGACCGGATCATGCTAAAAGGGGAT
GATAATATTCTGCTACAAAATATCTCCAAC

ORF - retro_mmur_453 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.7 %
Parental protein coverage: 70.65 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalRSRIQVWLYE-QVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGR-IMLKGDNITLLQSVSN
RS.IQVWL.E..VNM..EGCIIGFDE.MNLV.DD..EIH.K....K..G.......DNI.LLQ..SN
RetrocopyRSWIQVWLCE<EVNMQLEGCIIGFDEHMNLVSDDGQEIHCKSQENKWTGS<MLKGDDNI-LLQNISN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_453 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_453 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 115 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000091586 retrocopies
Callithrix jacchus ENSCJAG000000067351 retrocopy
Dasypus novemcinctus ENSDNOG0000000449024 retrocopies
Echinops telfairi ENSETEG0000001401524 retrocopies
Felis catus ENSFCAG000000008732 retrocopies
Homo sapiens ENSG0000018200410 retrocopies
Gorilla gorilla ENSGGOG000000007557 retrocopies
Microcebus murinus ENSMICG00000015537 3 retrocopies
retro_mmur_1406, retro_mmur_453 , retro_mmur_58,
Monodelphis domestica ENSMODG000000283943 retrocopies
Mustela putorius furoENSMPUG000000116427 retrocopies
Pongo abelii ENSPPYG000000003268 retrocopies
Pan troglodytes ENSPTRG0000003022411 retrocopies
Sorex araneus ENSSARG000000033119 retrocopies



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