RetrogeneDB ID: | retro_chof_1546 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_320662:155..660(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCUN1D1 | ||
Ensembl ID: | ENSCHOG00000013358 | ||
Aliases: | None | ||
Description: | DCN1, defective in cullin neddylation 1, domain containing 1 [Source:HGNC Symbol;Acc:18184] |
Percent Identity: | 61.71 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | NKLKSSQKDKVRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSL-DRKKLEQLYN |
NKLKSSQKDKV.Q.MIF.QSSEKTA..CLSQ....L.VA...F.QN.ELYI.ES..GS..D.KKLE.L.N | |
Retrocopy | NKLKSSQKDKVCQCMIFMQSSEKTALCCLSQIN*NLVVAIKKFLQNSELYI*ESTRGSM<DGKKLELLFN |
Parental | RYKDPQDENKIGIDGIQQFCDDL-ALDPASIIVLIIAWKFRAATQCE-FSKQEFMDGMTELGCDSIEKLK |
RYKD.QDENKIG.DGI.QFC.D...L..A.I.V.I....FR..TQCE..SKQ.F..GMTEL...S.E... | |
Retrocopy | RYKDTQDENKIGRDGIWQFCGDE<GLYQANISVMISGLVFRGKTQCE<VSKQVFTYGMTELPYESTE*KG |
Parental | AQIPK-MEQELKEPGRFKD-FYQFTFNFAKNPGQK |
.Q....MEQE.KEPG..KD.F.QFT.NF.KNP..K | |
Retrocopy | GQHAR<MEQEFKEPG*LKD<FFQFTLNFTKNPDEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007821 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013358 | 14 retrocopies | |
Callithrix jacchus | ENSCJAG00000005148 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022086 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019073 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000166 | 1 retrocopy | |
Homo sapiens | ENSG00000043093 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010767 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002369 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027708 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005983 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000658 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015661 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012276 | 1 retrocopy |