RetrogeneDB ID: | retro_cjac_1423 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 15:86934650..86935294(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCUN1D1 | ||
Ensembl ID: | ENSCJAG00000005148 | ||
Aliases: | None | ||
Description: | DCN1, defective in cullin neddylation 1, domain containing 1 [Source:HGNC Symbol;Acc:18184] |
Percent Identity: | 79.17 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 1 |
Parental | NKLKSSQKDKVRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLY-N |
NKLK.SQK.KV.Q.MI.TQSSEKTAVS.LS.NDW..DVATDNFFQNPEL.I.ESVK.SLDRK..EQL..N | |
Retrocopy | NKLK*SQKGKVHQLMILTQSSEKTAVSRLSLNDWQ*DVATDNFFQNPELCI*ESVK*SLDRKMSEQLT<N |
Parental | RYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQ |
RYK..QDEN.IG.DG.QQF.DDLALDPA.ISVLII.WKF.AA.QCEFSKQ.FM.GMTE.G.DSIEKL.A. | |
Retrocopy | RYKRSQDENEIGVDGVQQFYDDLALDPARISVLIITWKFTAAMQCEFSKQGFMGGMTEEGRDSIEKLEA* |
Parental | IPKMEQELKEPARFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPK |
I.KME.ELKEP..FKDF..FTFNFAKNPGQKGLDLEM.IA.WNLV..G.FKFL.L.NKFLLEHHKRSIPK | |
Retrocopy | ITKMEEELKEPGEFKDF**FTFNFAKNPGQKGLDLEMVIACWNLVQDGKFKFLEL*NKFLLEHHKRSIPK |
Parental | DTWNLL |
DTWNLL | |
Retrocopy | DTWNLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 31 .95 RPM |
SRP051959_heart | 0 .00 RPM | 27 .40 RPM |
SRP051959_kidney | 0 .00 RPM | 32 .37 RPM |
SRP051959_liver | 0 .00 RPM | 27 .16 RPM |
SRP051959_lung | 0 .00 RPM | 28 .06 RPM |
SRP051959_lymph_node | 0 .00 RPM | 24 .06 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 30 .38 RPM |
SRP051959_spleen | 0 .00 RPM | 30 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013358 | 14 retrocopies | |
Callithrix jacchus | ENSCJAG00000005148 | 2 retrocopies |
retro_cjac_1423 , retro_cjac_2358,
|
Callithrix jacchus | ENSCJAG00000018601 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000022086 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019073 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000166 | 1 retrocopy | |
Homo sapiens | ENSG00000043093 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010767 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002369 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027708 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005983 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000658 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015661 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012276 | 1 retrocopy |