RetrogeneDB ID: | retro_chof_1587 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_33249:9666..10379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNPS1 | ||
Ensembl ID: | ENSCHOG00000004866 | ||
Aliases: | None | ||
Description: | RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080] |
Percent Identity: | 57.79 % |
Parental protein coverage: | 78.88 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR |
S..S..SST...SSS.SSS.SS...GS..GSS.SS.S..S..S...R.S..SSSS.S....R.......R | |
Retrocopy | SILSRGSSTSFCSSSSSSSDSSITMGSGYGSSGSSSSEASNHS*SFRTSHRSSSSSS*DSLRPFWHRHNR |
Parental | SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYA |
..S...P....E..RK.R.P..KPTKVHIGRLT.NVTKD.IMEIFSTYGKI.MID...ER.HPH.SK.YA | |
Retrocopy | *HSAPIPNHPKEMKRKKR-PFSKPTKVHIGRLTWNVTKDQIMEIFSTYGKI*MIDKAIERTHPHVSKIYA |
Parental | YVEFENPDEAEKALKHMDGGQIDGQEITATAVLA-PWPRPPPRRFSPPRRMLPPPPMWRRSPPR-MRRR- |
YVEFEN.DEAEKALKHM.G..IDGQEI.A.A.LA.PWP.PP...FS.P.RM.P..P.W.R..P....RR. | |
Retrocopy | YVEFENLDEAEKALKHMNGRLIDGQEIAAPAMLA<PWPPPPCMQFSHPIRMWPLHPRWYRGHPH<WMRRR |
Parental | SRSPRRRSPVRRRSR-SPGRRRHRS-RSSSNSSR |
S.S.R.RSPV...S..SPG...H.S..SSSNSS. | |
Retrocopy | SCSSRHRSPVCWQSS<SPGCCHHKS<PSSSNSSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004866 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000002066 | 2 retrocopies | |
Equus caballus | ENSECAG00000023288 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014275 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008882 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015891 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031582 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000031310 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005105 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008703 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016951 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013200 | 1 retrocopy |