Parental gene:

RNPS1, ENSECAG00000023288

Aliases:None
Description:RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080]
Organism:Horse (Equus caballus)
Coordinates:13:40556699..40562563(+)


>ENSECAG00000023288
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGCAAAGACCGCTCTGATGAGAAGTCCAAGGATCGCTCCAAAGATAAAGGGGCCACCAAGGAGTCAAGCG
AGAAGGATCGTGGCAGGGATAAAACTCGAAAGGCAGCGCTTCCAGTGGTAGCAGCAGCACCAGGTCTCGGTCCAGCTCTA
CCTCCAGCTCGGGCTCCAGCACCAGCACAGGCTCGAGCAGTGGCTCCAGCTCCTCTTCGGCATCAAGCCGCTCAGGAAGT
TCCAGCACATCCCGCAGCTCCAGCTCCAGCAGCTCCTCTGGTTCTCCAAGTCCTTCTCGGCGCCGACATGACAACAGGCT
CCCGCTCCAAATCCAAACCACCCAAAAGAGACGAAAAGGAAAGGAAAAGGCGGCTTCCCCTAAACCCACCAAAGTGCACA
TCGGGAGACTCACCAAATGTGACCAAGGATCACATCATGGAGATATTCTCTACTTACGGGAAGATTAAAATGATTGACAT
GCCTGTAGAAAGGATGCACCCCCACCTGTCTAAAGGCTATGCATACGTGGAGTTTGAGAATCCAGATGAAGCCGAGAAGG
CGCTGAAGCACATGGACGGAGGACAAATCGATGGCCAGGAGATCACTGCCACAGCTGTGCTGGCCCCCTGGCCTAGGCCG
CCCCCAAGGCGTTTCAGCCCTCCCAGGAGAATGCTGCCACCACCTCCCATGTGGCGCCGATCACCCCCACGGATGAGGAG
AAGGTCACGTTCCCCGCGGCGCAGGTCCCCCGTGCGCCGGCGCTCTCGCTCCCCCCCGCCGCCGCCACAGGAGCCGTTCC
AGCTCCAACTCCTCCCGATAAGCAGG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 44 .75 RPM
SRP021940_embryo 117 .33 RPM
SRP021940_cerebellum 84 .29 RPM
SRP021940_testis 72 .00 RPM
SRP021940_placental_villous 41 .86 RPM
SRP021940_articular_cartilage 25 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017861 ortholog_one2one 1 retrogene
retro_amel_194,
Bos taurus ENSBTAG00000009969 ortholog_one2one 7 retrogenes
retro_btau_1187, retro_btau_1239, retro_btau_1283, retro_btau_1515, retro_btau_764, retro_btau_776, retro_btau_85,
Canis familiaris ENSCAFG00000019397 ortholog_one2one 1 retrogene
retro_cfam_449,
Choloepus hoffmanni ENSCHOG00000004866 ortholog_one2one 4 retrogenes
retro_chof_1587, retro_chof_1985, retro_chof_2272, retro_chof_493,
Callithrix jacchus ENSCJAG00000014969 ortholog_one2one 2 retrogenes
retro_cjac_2127, retro_cjac_3377,
Cavia porcellus ENSCPOG00000002066 ortholog_one2one 2 retrogenes
retro_cpor_363, retro_cpor_953,
Felis catus ENSFCAG00000007690 ortholog_one2one 1 retrogene
retro_fcat_248,
Homo sapiens ENSG00000205937 ortholog_one2one 1 retrogene
retro_hsap_2911,
Gorilla gorilla ENSGGOG00000014275 ortholog_one2many 1 retrogene
retro_ggor_2016,
Macropus eugenii ENSMEUG00000008882 ortholog_one2one 1 retrogene
retro_meug_1996,
Myotis lucifugus ENSMLUG00000016808 ortholog_one2many 3 retrogenes
retro_mluc_2237, retro_mluc_2618, retro_mluc_643,
Macaca mulatta ENSMMUG00000019238 ortholog_one2one 1 retrogene
retro_mmul_794,
Monodelphis domestica ENSMODG00000015891 ortholog_one2one 1 retrogene
retro_mdom_1171,
Mus musculus ENSMUSG00000034681 ortholog_one2many 1 retrogene
retro_mmus_173,
Oryctolagus cuniculus ENSOCUG00000004387 ortholog_one2one 2 retrogenes
retro_ocun_1544, retro_ocun_1745,
Otolemur garnettii ENSOGAG00000031582 ortholog_one2one 1 retrogene
retro_ogar_3241,
Pan troglodytes ENSPTRG00000031310 ortholog_one2one 1 retrogene
retro_ptro_1967,
Pteropus vampyrus ENSPVAG00000005105 ortholog_one2one 1 retrogene
retro_pvam_296,
Rattus norvegicus ENSRNOG00000008703 ortholog_one2many 4 retrogenes
retro_rnor_1537, retro_rnor_2135, retro_rnor_2988, retro_rnor_649,
Sarcophilus harrisii ENSSHAG00000016951 ortholog_one2one 1 retrogene
retro_shar_390,
Ictidomys tridecemlineatus ENSSTOG00000013200 ortholog_one2one 1 retrogene
retro_itri_1160,
Tupaia belangeri ENSTBEG00000009098 ortholog_one2one 8 retrogenes
retro_tbel_1262, retro_tbel_1851, retro_tbel_2132, retro_tbel_2154, retro_tbel_2216, retro_tbel_3193, retro_tbel_3286, retro_tbel_4688,
Tarsius syrichta ENSTSYG00000001629 ortholog_one2one 1 retrogene
retro_tsyr_957,
Tursiops truncatus ENSTTRG00000008220 ortholog_one2one 7 retrogenes
retro_ttru_1010, retro_ttru_1033, retro_ttru_1558, retro_ttru_1808, retro_ttru_1809, retro_ttru_203, retro_ttru_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_524 60.89 56.95
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Download FASTA sequences of all ENSECAG00000023288 retrocopies