RetrogeneDB ID: | retro_rnor_649 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:242249150..242249892(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rnps1 | ||
Ensembl ID: | ENSRNOG00000008703 | ||
Aliases: | None | ||
Description: | RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK1] |
Percent Identity: | 79.84 % |
Parental protein coverage: | 82.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MDLSGVKKKSLLGVKENNKKS-STRAPSPTKRKDRSDEKSKDRSKDKGTTKESSEKDRGRDKTRKRRSAS |
MDLSGVKKKSLLGVKENNKKS.STR.PSP.KR.DRSDEKSKDRSK.KG..KES.EKDR.RDKTRKR..AS | |
Retrocopy | MDLSGVKKKSLLGVKENNKKS<STRVPSPIKREDRSDEKSKDRSKNKGASKESIEKDRSRDKTRKRHRAS |
Parental | SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRS |
SGSSSTRSRSSSTSSSGSSTSTGSSSG...SS.SS...............SS.SP.P...RHDNR.RS.S | |
Retrocopy | SGSSSTRSRSSSTSSSGSSTSTGSSSG---SSLSSAXXXXXXXXXXXXXXSSSSPTPALHRHDNRLRSCS |
Parental | KSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVE |
KSKP.KRDEK.....SPSPKPTKVH.GRLTRNVTKDH.ME.FSTYGKIKMIDMPVERM.PHLSKGYAYVE | |
Retrocopy | KSKPAKRDEKRQEKGSPSPKPTKVHTGRLTRNVTKDHTMELFSTYGKIKMIDMPVERMSPHLSKGYAYVE |
Parental | FENPDEAEKALKHMDGG-QIDGQEITATAVLAPWPRPPPRRFS |
FENPDEAEKALKHMDG..QIDGQEITATAVLAPWPRPPP.R.S | |
Retrocopy | FENPDEAEKALKHMDGD<QIDGQEITATAVLAPWPRPPPQRSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 75 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 42 .29 RPM |
SRP017611_liver | 0 .00 RPM | 21 .05 RPM |