RetrogeneDB ID: | retro_rnor_2988 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:140270456..140271283(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rnps1 | ||
Ensembl ID: | ENSRNOG00000008703 | ||
Aliases: | None | ||
Description: | RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK1] |
Percent Identity: | 83.15 % |
Parental protein coverage: | 90.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TKRKDRSDEKSKDRSKDKGTTKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSS |
TKRKD.SDEKSKDRSKDKG.TKESSEKD.GRDKTRKRRSASSGSSSTRSR.SST..............SS | |
Retrocopy | TKRKDCSDEKSKDRSKDKGATKESSEKDCGRDKTRKRRSASSGSSSTRSRTSSTXXXXXXXXXXXXXDSS |
Parental | SSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDE-KERKRRSPSPKPTKVHIGR |
SSSASSRSGSSSTSRSSSSSSSS.SPSPS..RHDN.R........P.....K.RKRRSPSPK.TKVHIGR | |
Retrocopy | SSSASSRSGSSSTSRSSSSSSSSSSPSPSWHRHDN-RQHSRSKSKPPKRD>KKRKRRSPSPKATKVHIGR |
Parental | LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK-GYAYVEFENPDEAEKALKHMDGGQIDGQEITAT |
LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK.GYA.VEFENPDEAEKALKHM.GGQIDGQEITAT | |
Retrocopy | LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK>GYAHVEFENPDEAEKALKHMNGGQIDGQEITAT |
Parental | AVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR |
.VLAPWPRPPPRRFSPP.RMLPPPPMWRRSPPRMRRRSRSPR.RSPV.RRS.SPG.RRHRS.SSSNSSR | |
Retrocopy | VVLAPWPRPPPRRFSPPKRMLPPPPMWRRSPPRMRRRSRSPRHRSPVQRRSQSPG-RRHRS*SSSNSSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 75 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 42 .29 RPM |
SRP017611_liver | 0 .00 RPM | 21 .05 RPM |