RetrogeneDB ID: | retro_rnor_1537 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:141656146..141656629(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rnps1 | ||
Ensembl ID: | ENSRNOG00000008703 | ||
Aliases: | None | ||
Description: | RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK1] |
Percent Identity: | 90.06 % |
Parental protein coverage: | 52.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPD |
KRDEKER.R.SPSPKPTKVHIGRLTRNVTKDHIMEIFSTY..IKMIDMPVER.HPHLSKGYAYVEFENPD | |
Retrocopy | KRDEKERNRWSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYREIKMIDMPVERIHPHLSKGYAYVEFENPD |
Parental | EAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR |
EAEKALKHMDGGQIDGQEITATAVLAPWPRPPP.RFSPPRRMLPPPPMW.RSPP.MRRRS.SPRRRSP.. | |
Retrocopy | EAEKALKHMDGGQIDGQEITATAVLAPWPRPPPWRFSPPRRMLPPPPMWCRSPPLMRRRS*SPRRRSPM* |
Parental | RRSRSPGRRRHRSRSSSNSSR |
.RSRSPG.R.H.SRSSSNSS. | |
Retrocopy | KRSRSPGHRHHKSRSSSNSSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 75 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 42 .29 RPM |
SRP017611_liver | 0 .00 RPM | 21 .05 RPM |