RetrogeneDB ID:

retro_chof_1791

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_3850:24003..24367(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:COQ7
Ensembl ID:ENSCHOG00000000406
Aliases:None
Description:coenzyme Q7 homolog, ubiquinone (yeast) [Source:HGNC Symbol;Acc:2244]


Retrocopy-Parental alignment summary:






>retro_chof_1791
ATGAGCTGTATCTGGGCAGCGGCAGCCAGCTCACTGTTGCAGCTGTGCATAGTCACCCGGCGGCCCCTCTCAGCTTATGG
AAGAAGAATCAGAGTCAGGTTTGGCAGTTCAGGAATGACCTTAGACAATATCAATCAGGTAGCCATCGATTGAATAATCC
GAGTGGATCATGCAGGCAGTGTGGAGTGAACCGCATCTGTGCCGGGCAGACGGCCATTGCTTTGATGGACCAGTGTCAAG
TGAGTTGTCCAGAAAATGTGGATCAAGAAAAGGACCATTTGAAAAAGTTCAGTGAGTTAATGATTGCATTCAGGGTCTGG
CCGACAATTCTGACGCCCTTTGGAATGTGATGGGTTTTGCCCTG

ORF - retro_chof_1791 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.81 %
Parental protein coverage: 56.22 %
Number of stop codons detected: 3
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMSCVRAAAAGSLWRLRIGAPRPLSAYGRRISVRFRSSGMTLDNINWAAIDRIIRVDHAG-EYGANRIYAG
MSC..AAAA.SL..L.I...RPLSAYGRRI.VRF.SSGMTLDNIN..AID.IIRVDHAG...G.NRI.AG
RetrocopyMSCIWAAAASSLLQLCIVTRRPLSAYGRRIRVRFGSSGMTLDNINQVAID*IIRVDHAG<QCGVNRICAG
ParentalQMAV-LRRTSIGPVIQKMW-DQEKDHLKKFSELMVAFRVRPTILMPF-WNVMGFAL
Q.A..L..TS...V.QKMW.DQEKDHLKKFSELM.AFRV.PTIL.PF.WNVMGFAL
RetrocopyQTAI>L*WTSVK*VVQKMW<DQEKDHLKKFSELMIAFRVWPTILTPF<WNVMGFAL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1791 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000000406 4 retrocopies
Echinops telfairi ENSETEG000000162032 retrocopies
Macaca mulatta ENSMMUG000000066041 retrocopy
Sarcophilus harrisii ENSSHAG000000181111 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000039011 retrocopy
Tupaia belangeri ENSTBEG000000016431 retrocopy



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