RetrogeneDB ID: | retro_chof_291 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_6340:76376..76724(-) | ||
Located in intron of: | ENSCHOG00000001552 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ7 | ||
Ensembl ID: | ENSCHOG00000000406 | ||
Aliases: | None | ||
Description: | coenzyme Q7 homolog, ubiquinone (yeast) [Source:HGNC Symbol;Acc:2244] |
Percent Identity: | 69.67 % |
Parental protein coverage: | 53.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | AAAAG-SLWRLRIGAPRP-LSAYGRRISVRFRSSGMTLDNINWAAIDRIIRVDHAG-EYGANRIYAGQMA |
AAAA..SLW..R..A....LS.YGRRIS.RF..S.MTLDNIN.AAID.II.VDH...EYGANRI..GQM. | |
Retrocopy | AAAAS>SLWQVRTVASSS<LSVYGRRISIRFCGSEMTLDNINQAAIDQIIQVDHTA<EYGANRICTGQMV |
Parental | -VLRRTSIGPVIQKMWDQEKD-HLKKFSELMVAFRVRPTILMPFWNVMGFAL |
..L..TS...V.QKMWDQEK..HLKKFS.LMVAF.V.PTILMPFWNVMGFAL | |
Retrocopy | <MLCWTSVRLVMQKMWDQEKS<HLKKFSPLMVAFGVQPTILMPFWNVMGFAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000406 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016203 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006604 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018111 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003901 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001643 | 1 retrocopy |