RetrogeneDB ID: | retro_itri_642 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393308.1:3453445..3453802(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ7 | ||
Ensembl ID: | ENSSTOG00000003901 | ||
Aliases: | None | ||
Description: | coenzyme Q7 homolog, ubiquinone (yeast) [Source:HGNC Symbol;Acc:2244] |
Percent Identity: | 67.5 % |
Parental protein coverage: | 55.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AAPSLWRLRLGARRPLSACGSRVGTRARSSGMTLDNVNRAALDRIIRVDHAGEYGANRIYAGQMAVLGRT |
A.PSLW.L...A..PLSACG.R...R..SS.MTLDN.N..A.D.II....AGEYGAN.I.AGQMA.LGRT | |
Retrocopy | AVPSLWHLLTRAQGPLSACG-RISVRFHSSVMTLDNINFVAVD*IILLNYAGEYGANHIHAGQMAILGRT |
Parental | SVGPVIQKMWDQEKDHLKKFNELMVAFRVRPTVLMPFWNVVGFALGAGTA |
S.G.V..KMWDQEK..LKKF..LM.AFRVRP..LMPFWNV.GFALGAG.A | |
Retrocopy | SIGLVFWKMWDQEKNQLKKFSKLMSAFRVRPKILMPFWNVLGFALGAGAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000406 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016203 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006604 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018111 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003901 | 1 retrocopy |
retro_itri_642 ,
|
Tupaia belangeri | ENSTBEG00000001643 | 1 retrocopy |