RetrogeneDB ID: | retro_mmul_347 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:45667155..45667809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000011613 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ7 | ||
Ensembl ID: | ENSMMUG00000006604 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSCAGAAAAPCLWRLRPGARRSLSAYGRRIIVRFRSSGMTLDNINRAVVDRIIRVDHAGEYGANRIYAGQ |
MSCA.AAAAPCLWRLR.GARRSLSAYGRRIIVRFRSSGMTLDNIN.AVVDRII.VDHAGEYGANRIYAGQ | |
Retrocopy | MSCARAAAAPCLWRLRTGARRSLSAYGRRIIVRFRSSGMTLDNINWAVVDRIIWVDHAGEYGANRIYAGQ |
Parental | MAVLGRTSVGPVIQKMWDQEKDHLKKFSELMVTFRVRPTVLMPFWNVLGFALGAGTALLGKEGAMACTVA |
MAVLGRTSVGPVIQKMWDQEKDHLKKFSELMVTFRVRPTVLMPFWNVLGFALGAGTALLGKEGAMACTV. | |
Retrocopy | MAVLGRTSVGPVIQKMWDQEKDHLKKFSELMVTFRVRPTVLMPFWNVLGFALGAGTALLGKEGAMACTVV |
Parental | VEESIAHHYNNQIRKLMEEDPEKYKELLQVIKKFRDEELEHHDTGLEHDAELAPAYAVLKSVIQAGCKVA |
VEESIAHHYNNQIRKLMEEDPEK..ELLQVIKKFRDEELEHHDTGLEHDAELAPAYAVLKSVIQAGCKVA | |
Retrocopy | VEESIAHHYNNQIRKLMEEDPEKHEELLQVIKKFRDEELEHHDTGLEHDAELAPAYAVLKSVIQAGCKVA |
Parental | IYLSERL |
IYLSERL | |
Retrocopy | IYLSERL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .13 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 2 .62 RPM |
SRP007412_cerebellum | 0 .06 RPM | 0 .90 RPM |
SRP007412_heart | 0 .00 RPM | 4 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 2 .70 RPM |
SRP007412_liver | 0 .24 RPM | 2 .14 RPM |
SRP007412_testis | 0 .04 RPM | 4 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000406 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016203 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006604 | 1 retrocopy |
retro_mmul_347 ,
|
Sarcophilus harrisii | ENSSHAG00000018111 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003901 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001643 | 1 retrocopy |