RetrogeneDB ID: | retro_chof_577 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_123187:3214..3867(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE4A | ||
Ensembl ID: | ENSCHOG00000003695 | ||
Aliases: | None | ||
Description: | non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935] |
Percent Identity: | 50.9 % |
Parental protein coverage: | 72.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FDMLRYVETLLTLTV-VNPLEDEELFRDEDSSDYEVLAYDSWKISRRTAENTCNKTHTFHFLLGSIQGEA |
F.....V...L.L.V..N..EDE....DE.S......A...W......A........TFHF..GS...E. | |
Retrocopy | FNQVAFVTFYLYLWV<LNWMEDEH---DELSDCDDIIALSFWETVQKEATSWILQAETFHFIFGSFKQEP |
Parental | PVPKPRVDRPKKVRVIEEQRAMPAQLKRME-ESQQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDP |
...K.R....KK....EE...MP..LK.....S.QEATEKEVERILGLLQTYFR..PD.P.S.F.FV.DP | |
Retrocopy | SARKSRLEHQKKAHKMEENGDMPTKLKKLDLSSNQEATEKEVERILGLLQTYFRKYPDSPVSYFEFVIDP |
Parental | HSFPRTVENIFHVSFII-DGFARIRLDQDRLPIIEPVNINEESEGIDQNTQTRNQGILALSYRDWEEIVK |
.SF.RTVENIF.VSFII.DGFARIRLDQDRLP..EP.NI....EG.......R.QG...LS..DW..IV. | |
Retrocopy | NSFSRTVENIFYVSFIIRDGFARIRLDQDRLPVLEPINIDQMGEGNNSISNGRKQGVISLSLQDWKNIVA |
Parental | TFEISEPVIASS |
TFEISE..I..S | |
Retrocopy | TFEISEAMITNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010897 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019166 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012419 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003695 | 1 retrocopy |
retro_chof_577 ,
|
Dipodomys ordii | ENSDORG00000003880 | 1 retrocopy | |
Equus caballus | ENSECAG00000016651 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014906 | 1 retrocopy | |
Felis catus | ENSFCAG00000003647 | 1 retrocopy | |
Homo sapiens | ENSG00000107672 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004214 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012044 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002960 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016919 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010026 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002712 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017186 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020452 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011112 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006534 | 1 retrocopy |