RetrogeneDB ID: | retro_ecab_109 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 28:27702539..27703559(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006854 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE4A | ||
Ensembl ID: | ENSECAG00000016651 | ||
Aliases: | None | ||
Description: | non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935] |
Percent Identity: | 56.58 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ENREDILN-ASDKLTEVLEEANTLFNGVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLNSFDMLRYVET |
.NR.DI.N.ASD.LTE.LEEAN.LF.GVSR.REA.LDA.FLVLASDLGKEKAKQL.S....F........ | |
Retrocopy | QNRDDIVNTASDSLTEALEEANVLFDGVSRTREAALDAQFLVLASDLGKEKAKQLNSNTSFFNQVAFCDF |
Parental | LLTHMGVNPLEAEELIRDEDSSDFEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGEFPVPKPRTDRP |
L....G.N..E..E...DE.S..........W....K.A........TFHF..GS...E...PK.R.D.. | |
Retrocopy | LFLFVGLNWMEDDE--QDELSGCDDNVPLSFWETVQKEASSWMLRAETFHFIFGSFKSEPSAPKHRLDHQ |
Parental | RKVPMIEQRREMPAQLKRME-ESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVIDPHSFPRTVENI |
.KV...E....MP..L......S.QEATEKEVERILGLLQ.YFR..PDTP.S.F.FVIDP.SF.RTVENI | |
Retrocopy | KKVHKMEENGDMPTKLRKVDLNSNQEATEKEVERILGLLQMYFRKYPDTPVSYFEFVIDPNSFSRTVENI |
Parental | FHVSFIIRDGFARIRLDQDRLPIIEPVNINEESEGIDQNTQIRNQGIIALSYRDWEEIVKTFEISEPVIA |
F.VSFIIRDGFARIRLDQDRLPI.EP.NIN...EG.D.....R.QG.I.LS..DW..IV..FEISE..I. | |
Retrocopy | FYVSFIIRDGFARIRLDQDRLPILEPININQMGEGNDPSSHGRKQGVISLSLEDWKNIVAAFEISEAMIT |
Parental | S |
. | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 1 .59 RPM | 3 .95 RPM |
SRP021940_cerebellum | 2 .75 RPM | 5 .97 RPM |
SRP021940_embryo | 2 .38 RPM | 15 .27 RPM |
SRP021940_placental_villous | 0 .82 RPM | 8 .37 RPM |
SRP021940_synovial_membrane | 1 .62 RPM | 7 .30 RPM |
SRP021940_testis | 176 .29 RPM | 30 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_43 |
Macaca mulatta | retro_mmul_716 |
Bos taurus | retro_btau_1387 |
Canis familiaris | retro_cfam_379 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010897 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019166 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012419 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003695 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003880 | 1 retrocopy | |
Equus caballus | ENSECAG00000016651 | 2 retrocopies |
retro_ecab_109 , retro_ecab_465,
|
Erinaceus europaeus | ENSEEUG00000014906 | 1 retrocopy | |
Felis catus | ENSFCAG00000003647 | 1 retrocopy | |
Homo sapiens | ENSG00000107672 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004214 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012044 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002960 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016919 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010026 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002712 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017186 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020452 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011112 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006534 | 1 retrocopy |