RetrogeneDB ID: | retro_fcat_994 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:126501469..126502306(+) | ||
Located in intron of: | ENSFCAG00000003645 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE4A | ||
Ensembl ID: | ENSFCAG00000003647 | ||
Aliases: | None | ||
Description: | non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935] |
Percent Identity: | 57.3 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ENREDILN-ASDKLTEVLEEANTLFNGVSRAREAVLDAQFLVLASDLGKEKAKQLRSDLNSFDMLRYVET |
.NR.DI.N.ASD.LTE.LEEAN.LF.GVSR.REA.LDAQFLVLASDLGKEKAKQL..D...F........ | |
Retrocopy | QNRDDIVNTASDTLTEALEEANVLFDGVSRTREAALDAQFLVLASDLGKEKAKQLNCDMSFFNQVAFCDF |
Parental | LLTHMGVNPLEAEELIRDEDSSDFEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGEFPVPKPRSDRP |
L....G.N..E..E..RDE.S.....I....W....K.A........TFHF..GS.......PKPR.... | |
Retrocopy | LFIFVGLNWMEDDE--RDELSGCDDNIALSFWETVQKEATSWIVQAETFHFIFGSFKSKPSAPKPRLEHQ |
Parental | RKGPTTEEKKTMPDQLSEMEESH-QEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPRTVENI |
.K....EE...MP..L.....S..QEATEKEVERILGLLQTYFR..PDTP.S.F.FV.DP.SF.RTVENI | |
Retrocopy | KKAHKMEENGAMPTKLRKLDLSNNQEATEKEVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENI |
Parental | FHVSFIIRDGFARIKLDQDRLPIIEPVNINEESEGIDQNTQIRNQGIIALSYRDWEEIVKTFEISEPVIA |
F.VSFIIRDGFARI.LDQDRLPI.EP.NIN...EG.D.....R.QG.I.LS..DW..IV.TFEISE..I. | |
Retrocopy | FYVSFIIRDGFARIRLDQDRLPILEPININQVGEGNDPSSHGRRQGVISLSLQDWKNIVATFEISEAMIT |
Parental | S |
. | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .49 RPM | 9 .18 RPM |
SRP017611_kidney | 3 .30 RPM | 30 .61 RPM |
SRP017611_liver | 0 .30 RPM | 10 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010897 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019166 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012419 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003695 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003880 | 1 retrocopy | |
Equus caballus | ENSECAG00000016651 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014906 | 1 retrocopy | |
Felis catus | ENSFCAG00000003647 | 1 retrocopy |
retro_fcat_994 ,
|
Homo sapiens | ENSG00000107672 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004214 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012044 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002960 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016919 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010026 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002712 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017186 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020452 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011112 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006534 | 1 retrocopy |