RetrogeneDB ID: | retro_vpac_260 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3427:60798..61341(+) | ||
Located in intron of: | ENSVPAG00000009250 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE4A | ||
Ensembl ID: | ENSVPAG00000006534 | ||
Aliases: | None | ||
Description: | non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935] |
Percent Identity: | 59.12 % |
Parental protein coverage: | 65.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | WKISGKTAENTFNKTHTFHFLLGSIQGEAPVPKPRVDRPRKVRMIEEQQAMPAQLKRME-ESHQEATEKE |
W....K.A.........FHF..GS...E....KPR.....KV...EE...MP..L......S.QEATEKE | |
Retrocopy | WETVQKEATSWMLQAEKFHFIFGSFKSEPSARKPRLEHRKKVHKMEENGDMPTKLRKLDLNSNQEATEKE |
Parental | VERILGLLQTYFQEDPDTPMSFFDFVIDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPIIEPVNINE |
VERILGLLQTYF...PDTP.S.F.FVIDP.SF.RTVENIF.VSFIIRDGFARIRLDQDRLPI.EP.NIN. | |
Retrocopy | VERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIRLDQDRLPILEPININQ |
Parental | ENEGIDQNTQIRNQGIIALSYRDWEEIVKTFEISEAVIASS |
..EG.D.....R.QG.I.LS..DW..IV.TFEISEA.I..S | |
Retrocopy | VGEGNDPSSHCRKQGVISLSLQDWKNIVATFEISEAMITNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010897 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019166 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012419 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003695 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003880 | 1 retrocopy | |
Equus caballus | ENSECAG00000016651 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014906 | 1 retrocopy | |
Felis catus | ENSFCAG00000003647 | 1 retrocopy | |
Homo sapiens | ENSG00000107672 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004214 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012044 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002960 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016919 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010026 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002712 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017186 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020452 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011112 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006534 | 1 retrocopy |
retro_vpac_260 ,
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