RetrogeneDB ID: | retro_cjac_1738 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 19:20323358..20324359(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000005046 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMD1 | ||
Ensembl ID: | ENSCJAG00000005257 | ||
Aliases: | None | ||
Description: | adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457] |
Percent Identity: | 92.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSM |
MEAAHFFEG.EKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLK.VQCSIISVTKTDKQ.AYVLSE.S. | |
Retrocopy | MEAAHFFEGIEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKYVQCSIISVTKTDKQKAYVLSEHST |
Parental | FVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAI |
FVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDS.QSFFY.RKNFMKPS.QGYPH.NFQEEIEFLNAI | |
Retrocopy | FVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSVQSFFYPRKNFMKPSYQGYPHQNFQEEIEFLNAI |
Parental | FPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIR |
FPNGAAYCMG.MNSDCWYLYTLDFPESRVISQPDQTLEILMSE.DPAVMDQFYMKDGVTAKDVT.E.GI. | |
Retrocopy | FPNGAAYCMGHMNSDCWYLYTLDFPESRVISQPDQTLEILMSEFDPAVMDQFYMKDGVTAKDVTPERGIH |
Parental | DLIPG-SVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGK |
DLIPG.SVIDAT.FNPCGYSMNG.KSDGTYWTIHITPEPEFSYV.FETNL.QTSYDD.IRKVVEVFKPGK | |
Retrocopy | DLIPG<SVIDATTFNPCGYSMNGIKSDGTYWTIHITPEPEFSYVRFETNLGQTSYDDRIRKVVEVFKPGK |
Parental | FVTTLFVNQSSKCRTVLSSPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS |
.VTTLFVNQSSKCRTVLS.PQK.EGFK.LDC.SAMFNDYNFVFTSFAKKQQQQQS | |
Retrocopy | CVTTLFVNQSSKCRTVLSLPQKTEGFKCLDCHSAMFNDYNFVFTSFAKKQQQQQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 47 .13 RPM |
SRP051959_heart | 0 .04 RPM | 29 .59 RPM |
SRP051959_kidney | 0 .04 RPM | 56 .89 RPM |
SRP051959_liver | 0 .02 RPM | 25 .36 RPM |
SRP051959_lung | 0 .05 RPM | 32 .36 RPM |
SRP051959_lymph_node | 0 .00 RPM | 45 .87 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 18 .91 RPM |
SRP051959_spleen | 0 .00 RPM | 37 .90 RPM |