RetrogeneDB ID: | retro_cjac_2394 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:160000164..160000485(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YKT6 | ||
Ensembl ID: | ENSCJAG00000008053 | ||
Aliases: | None | ||
Description: | YKT6 v-SNARE homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16959] |
Percent Identity: | 67.29 % |
Parental protein coverage: | 53.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LYSLSVLYKGDAKVVLLKAAHD-VSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVR |
L.SLSVLY.G..K.V..KA..D.V.SFSF.QRSSVQE.MTF.SQL..E.S.KG.R.SVKEQ...CHV.VR | |
Retrocopy | LSSLSVLYEGEPKAVPPKATYDNVASFSFSQRSSVQEVMTFMSQLAEEGSCKGIRSSVKEQGFVCHVHVR |
Parental | NDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRI |
ND.LAGV.IADNE.PS.VA.T..E..LDEFSKQV.R. | |
Retrocopy | NDGLAGVAIADNERPSQVACT*MEYLLDEFSKQVNRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 28 .00 RPM |
SRP051959_heart | 0 .00 RPM | 22 .15 RPM |
SRP051959_kidney | 0 .00 RPM | 24 .87 RPM |
SRP051959_liver | 0 .00 RPM | 11 .70 RPM |
SRP051959_lung | 0 .00 RPM | 22 .40 RPM |
SRP051959_lymph_node | 0 .00 RPM | 17 .19 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 23 .83 RPM |
SRP051959_spleen | 0 .00 RPM | 18 .21 RPM |