RetrogeneDB ID: | retro_fcat_1327 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:24089538..24090132(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YKT6 | ||
Ensembl ID: | ENSFCAG00000014362 | ||
Aliases: | None | ||
Description: | YKT6 v-SNARE homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16959] |
Percent Identity: | 70.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MKLYSLSVLYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYV |
MKLYSLSVLYKG.PK.VLLKA.Y...SFSFFQ.SS.Q..MT.T.Q..VE.SA.GSRASV.EQEYLC.VYV | |
Retrocopy | MKLYSLSVLYKGKPKVVLLKATYNMCSFSFFQKSSDQKVMTLTDQWAVEHSA*GSRASVQEQEYLCRVYV |
Parental | RNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIEWPVGSPATIHYTA-LDGHLSRYQNPREADPM |
.N.SLAGVVIADSE.P...A.T.LEKVL.EFSKQV...EWPVGS.ATIH..A.LDG..SRY.N..E..PM | |
Retrocopy | *NHSLAGVVIADSELPPCMALTFLEKVLEEFSKQVESLEWPVGSLATIH*VA>LDGSPSRYKNC*ETNPM |
Parental | SKVQ-AELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT-QSKAFYKTARK-QNSCCAVM |
.KVQ..ELDETKI.LHNTMESLLE.GEKL.DLVSKS.VLGT...K...K..RK..NSCCA.M | |
Retrocopy | TKVQ>MELDETKIRLHNTMESLLEQGEKLGDLVSKSQVLGT<SLKPSIKWPRK<ENSCCAIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .08 RPM |
SRP017611_liver | 0 .00 RPM | 10 .21 RPM |