RetrogeneDB ID: | retro_eeur_267 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_229703:4543..5137(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YKT6 | ||
Ensembl ID: | ENSEEUG00000001247 | ||
Aliases: | None | ||
Description: | YKT6 v-SNARE homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16959] |
Percent Identity: | 98.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKLYSLSVFYKAESKVGLLKTAQDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYV |
MKLYSLSVFYKAESKVGLLKTAQDVSSFSFFQRSSVQEFMTFTSQ.IVERS.KGSRASVKEQEYLCHVYV | |
Retrocopy | MKLYSLSVFYKAESKVGLLKTAQDVSSFSFFQRSSVQEFMTFTSQMIVERSVKGSRASVKEQEYLCHVYV |
Parental | RNDSLAGVVIADSEYPSRVAFSLLEKVLDEFSKEVDRIEWPVGSPETICFTKLGDYLSRYQNPREADPMS |
RNDSLAGVVIADSEYPSRVAFSLLEKVLDEFSKEVDRIEWPVGSPETICFTKLGDYLSRYQNPREADPMS | |
Retrocopy | RNDSLAGVVIADSEYPSRVAFSLLEKVLDEFSKEVDRIEWPVGSPETICFTKLGDYLSRYQNPREADPMS |
Parental | KVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGVQSKAFYKTARKQNSCCAIM |
KVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGVQSKAFYKTARKQNSCCAIM | |
Retrocopy | KVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGVQSKAFYKTARKQNSCCAIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .61 RPM | 12 .25 RPM |
SRP017611_kidney | 3 .75 RPM | 25 .69 RPM |
SRP017611_liver | 0 .96 RPM | 14 .47 RPM |