RetrogeneDB ID: | retro_ocun_15 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:78745887..78746484(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024960 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002981 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SFSFFQRASVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEK |
SFSFFQRASVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEK | |
Retrocopy | SFSFFQRASVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEK |
Parental | VLDEFSKQVDRIEWPVGSPATIQYTALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEK |
VLDEFSKQVDRIEWPVGSPATIQYTALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEK | |
Retrocopy | VLDEFSKQVDRIEWPVGSPATIQYTALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEK |
Parental | LDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM |
LDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM | |
Retrocopy | LDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 5 .24 RPM | 17 .44 RPM |
SRP017611_kidney | 10 .14 RPM | 41 .25 RPM |
SRP017611_liver | 3 .01 RPM | 10 .41 RPM |