RetrogeneDB ID: | retro_ggor_2493 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:160090143..160090700(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000014819 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YKT6 | ||
Ensembl ID: | ENSGGOG00000027036 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.63 % |
Parental protein coverage: | 95.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKLYSLSVLYKGEAKVVLLKAAYD-VSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVY |
.K.YSL.VLYKGEAKVVLLKA.YD.V.SFSFFQRSSVQEFMTFT.QLIVE.SSKGTRASV.EQDY..HVY | |
Retrocopy | VKPYSLRVLYKGEAKVVLLKARYDDVASFSFFQRSSVQEFMTFTNQLIVEHSSKGTRASVEEQDYMWHVY |
Parental | VRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYPALDGHLSRYQNPREADPM |
V.NDSLAG....DNE.PSRVAFTLLEKVLDEFSKQ..RIDWPVGSPATIH..ALDGHLSR.QNPR.ADP. | |
Retrocopy | VQNDSLAG----DNECPSRVAFTLLEKVLDEFSKQINRIDWPVGSPATIHSAALDGHLSRHQNPRDADPV |
Parental | TKVQAELDETKIILHNTMESLLERGEKLDDLVSKSE-VLGTQSKAFYKTAR |
T.VQAE.DET.I..HNTME.LLERGEK...LVSKSE..LGTQSKAFYKT.. | |
Retrocopy | TNVQAEPDETQIVVHNTMECLLERGEKRGGLVSKSE<GLGTQSKAFYKTTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 64 .26 RPM |
SRP007412_cerebellum | 0 .04 RPM | 62 .25 RPM |
SRP007412_heart | 0 .00 RPM | 27 .14 RPM |
SRP007412_kidney | 0 .00 RPM | 64 .60 RPM |
SRP007412_liver | 0 .00 RPM | 20 .13 RPM |
SRP007412_testis | 0 .00 RPM | 76 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3687 |
Pan troglodytes | retro_ptro_2500 |
Pongo abelii | retro_pabe_3022 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017618 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000274 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000002903 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011207 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008053 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015173 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016393 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001247 | 1 retrocopy | |
Felis catus | ENSFCAG00000014362 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027036 | 1 retrocopy |
retro_ggor_2493 ,
|
Macropus eugenii | ENSMEUG00000014769 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018200 | 2 retrocopies | |
Mus musculus | ENSMUSG00000002741 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003689 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002981 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017595 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019141 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016750 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006052 | 2 retrocopies |