RetrogeneDB ID: | retro_cjac_3127 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:32716835..32717509(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000034832 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSCJAG00000006394 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854] |
Percent Identity: | 82.89 % |
Parental protein coverage: | 92.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTDTSDKKLQLIKDYREKVES |
Y.DMATCMKAVTEQGAELSNEER.LLSVAYKNVV.G.RS.WRVI.SIEQKT.TSDKKLQLIKDYREKVES | |
Retrocopy | YNDMATCMKAVTEQGAELSNEERHLLSVAYKNVVRGHRSTWRVILSIEQKTNTSDKKLQLIKDYREKVES |
Parental | ELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKK |
ELRSI.TTVLE.LDKYLIA.ATNPESKVF..KMKGDYF.YLAEVACGDDRKQTIDNSQGAYQEAF.I... | |
Retrocopy | ELRSI*TTVLE-LDKYLIAKATNPESKVFFRKMKGDYFQYLAEVACGDDRKQTIDNSQGAYQEAFHI-RR |
Parental | EMQPTHPIRLGLALNFSVF-YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTL |
...P......GL.L....F.YYE.LNNPELA.TLAK.AFDEAIAELDTLNEDSYKD.TLIM.LLRDNLT. | |
Retrocopy | RCNPHT*STWGLLLTSLYF<YYETLNNPELAYTLAKAAFDEAIAELDTLNEDSYKDNTLIMWLLRDNLTF |
Parental | WTSDSAGEECDAAEGAEN |
WTSDSAGEECDAAEGA.N | |
Retrocopy | WTSDSAGEECDAAEGAGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 68 .23 RPM |
SRP051959_heart | 0 .04 RPM | 49 .66 RPM |
SRP051959_kidney | 0 .04 RPM | 48 .65 RPM |
SRP051959_liver | 0 .02 RPM | 33 .66 RPM |
SRP051959_lung | 0 .02 RPM | 37 .14 RPM |
SRP051959_lymph_node | 0 .05 RPM | 30 .66 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 15 .50 RPM |
SRP051959_spleen | 0 .04 RPM | 37 .31 RPM |