Parental gene:

YWHAQ, ENSOCUG00000010482

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide (YWHAQ), mRNA [Source:RefSeq mRNA;Acc:NM_001082168]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018803:296047..326638(+)


>ENSOCUG00000010482
ATGGAGAAGACGGAGCTGATCCAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAA
GGCCGTGACGGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTCTCGGTGGCCTACAAGAACGTGGTCGGGG
GCCGCCGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACGTCGGACAAGAAGCTGCAGCTCATCAGA
GACTACCGGGAGAAGGTGGAGTCGGAGCTGCGGGCCATCTGCACCACGGTGCTGGAATTGTTGGATAAGTATTTGATAGC
CAATGCAACTAATCCAGAGAGTAAAGTCTTCTATCTGAAAATGAAGGGCGATTACTTCCGGTACCTGGCTGAAGTTGCAT
GTGGAGATGATCGAAAACAAACGATAGATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATG
CAACCCACACACCCAATCCGCCTGGGGCTGGCTCTGAACTTTTCTGTATTTTACTATGAGATCCTTAATAACCCGGAGCT
CGCCTGCACACTGGCTAAAACGGCTTTTGACGAGGCCATTGCAGAGCTCGACACACTGAATGAAGACTCCTACAAAGACA
GCACCCTCATCATGCAGTTGCTTAGAGACAATTTAACATTATGGACATCAGACAGTGCAGGAGAAGAATGTGATGCAGCA
GAAGGGGCGGAAAACTAA

Library Parental gene expression (RPM)
SRP017611_liver 18 .58 RPM
SRP017611_kidney 107 .34 RPM
SRP017611_brain 213 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008618 ortholog_one2one 4 retrogenes
retro_amel_1214, retro_amel_1382, retro_amel_1837, retro_amel_917,
Bos taurus ENSBTAG00000002108 ortholog_one2one 2 retrogenes
retro_btau_1180, retro_btau_86,
Callithrix jacchus ENSCJAG00000006394 ortholog_one2one 2 retrogenes
retro_cjac_2197, retro_cjac_3127,
Cavia porcellus ENSCPOG00000011321 ortholog_one2one 4 retrogenes
retro_cpor_135, retro_cpor_1463, retro_cpor_616, retro_cpor_668,
Equus caballus ENSECAG00000004925 ortholog_one2one 1 retrogene
retro_ecab_134,
Echinops telfairi ENSETEG00000015359 ortholog_one2one 4 retrogenes
retro_etel_1027, retro_etel_1048, retro_etel_235, retro_etel_65,
Felis catus ENSFCAG00000007854 ortholog_one2one 2 retrogenes
retro_fcat_1702, retro_fcat_771,
Homo sapiens ENSG00000134308 ortholog_one2one 2 retrogenes
retro_hsap_3004, retro_hsap_8,
Gorilla gorilla ENSGGOG00000001569 ortholog_one2one 1 retrogene
retro_ggor_2081,
Myotis lucifugus ENSMLUG00000005383 ortholog_one2one 1 retrogene
retro_mluc_1817,
Monodelphis domestica ENSMODG00000014740 ortholog_one2one 1 retrogene
retro_mdom_1339,
Mustela putorius furo ENSMPUG00000013252 ortholog_one2one 2 retrogenes
retro_mputfur_1132, retro_mputfur_730,
Mus musculus ENSMUSG00000076432 ortholog_one2one 10 retrogenes
retro_mmus_1076, retro_mmus_1378, retro_mmus_1926, retro_mmus_2250, retro_mmus_2299, retro_mmus_2471, retro_mmus_2689, retro_mmus_3250, retro_mmus_3308, retro_mmus_406,
Nomascus leucogenys ENSNLEG00000013534 ortholog_one2many 3 retrogenes
retro_nleu_2543, retro_nleu_750, retro_nleu_869,
Oryctolagus cuniculus ENSOCUG00000000734 within_species_paralog 2 retrogenes
retro_ocun_1091, retro_ocun_248,
Oryctolagus cuniculus ENSOCUG00000003002 within_species_paralog 1 retrogene
retro_ocun_273,
Oryctolagus cuniculus ENSOCUG00000014607 other_paralog 2 retrogenes
retro_ocun_1062, retro_ocun_1576,
Otolemur garnettii ENSOGAG00000000547 ortholog_one2one 3 retrogenes
retro_ogar_1047, retro_ogar_1732, retro_ogar_39,
Pongo abelii ENSPPYG00000012663 ortholog_one2one 4 retrogenes
retro_pabe_1165, retro_pabe_2490, retro_pabe_3391, retro_pabe_3511,
Pan troglodytes ENSPTRG00000011641 ortholog_one2one 2 retrogenes
retro_ptro_2032, retro_ptro_3,
Pteropus vampyrus ENSPVAG00000005334 ortholog_one2one 1 retrogene
retro_pvam_983,
Rattus norvegicus ENSRNOG00000008104 ortholog_one2many 5 retrogenes
retro_rnor_1569, retro_rnor_2065, retro_rnor_2123, retro_rnor_2180, retro_rnor_2746,
Sorex araneus ENSSARG00000012476 ortholog_one2one 4 retrogenes
retro_sara_1, retro_sara_162, retro_sara_179, retro_sara_23,
Tursiops truncatus ENSTTRG00000000871 ortholog_one2one 4 retrogenes
retro_ttru_1006, retro_ttru_1109, retro_ttru_1530, retro_ttru_1536,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1463 85.80 71.84
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Download FASTA sequences of all ENSOCUG00000010482 retrocopies