RetrogeneDB ID:

retro_nleu_869

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397275.1:23485588..23486321(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000019201
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAQ
Ensembl ID:ENSNLEG00000013534
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_869
ATGGAGAAGACTGAGGTGATCCAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAA
GGCAGTGACCGAGCAGGGCGCCGAGCTGTCCCACGAGGAGTGCAACCTGCTCTCTGTGGCCTACAAGAACGTGGTGGGGG
CCCGCAGGTCCGCCTGGAAGGTCATCCCTAGCATCAGCAGAAGACTGACACCTCCAACAAGAAGTTGCAGCTGATTAAGG
ACTATCAGGAGAAAGTGGAGTCCAGCTGAGATCCATCTGCAAAAGGGTCCTGGAATTGTTGGATAAATATTTAATAGCCA
ATGCAACTAATCCAGAGAGTAAGGTGTTCTATCTGAAAATGAAGGGTGATTACTTCCAGTACCTTGCTGAAGTTGCATGT
GGTGATGATCAAAAACAAATGATAGATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATGCA
ACCCGCACACCCAATCCGCCTGGGGCTTGCTCTTAACTTTTCTGTATTTTACTATGAGATTCTTAATAACCCAGAGCTTG
CCTGCATGCTGGCTAAAACAGCTTTTGATGAGGCCATTGCTCAACTTGATACACTGAATGAAGACTCATACAAAGACAGC
ACCCTCATCATGCAGTTGCTTAGAGACAACCTAACACTTTGGACATTAGACAGTGCAGGAGAAGAATGTGATGCGGCAGA
AGGGGCTGAAAAC

ORF - retro_nleu_869 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.45 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSI-EQKT
MEKTE.IQ..........YDDMATCMKAVTEQGAELS.EE.NLLSVAYKNVVG.RRSAW.VI.SI..QKT
RetrocopyMEKTEVIQXXXXXXXXXXYDDMATCMKAVTEQGAELSHEECNLLSVAYKNVVGARRSAWKVIPSI<QQKT
ParentalDTSDKKLQLIKDYREKVES-ELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDR
DTS.KKLQLIKDY.EKVES..LRSIC..VLELLDKYLIANATNPESKVFYLKMKGDYF.YLAEVACGDD.
RetrocopyDTSNKKLQLIKDYQEKVES<QLRSICKRVLELLDKYLIANATNPESKVFYLKMKGDYFQYLAEVACGDDQ
ParentalKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNE
KQ.IDNSQGAYQEAFDISKKEMQP.HPIRLGLALNFSVFYYEILNNPELAC.LAKTAFDEAIA.LDTLNE
RetrocopyKQMIDNSQGAYQEAFDISKKEMQPAHPIRLGLALNFSVFYYEILNNPELACMLAKTAFDEAIAQLDTLNE
ParentalDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAEGAEN
DSYKDSTLIMQLLRDNLTLWT.DSAGEECDAAEGAEN
RetrocopyDSYKDSTLIMQLLRDNLTLWTLDSAGEECDAAEGAEN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_869 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 86 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000086184 retrocopies
Bos taurus ENSBTAG000000021082 retrocopies
Choloepus hoffmanni ENSCHOG0000000466113 retrocopies
Callithrix jacchus ENSCJAG000000063942 retrocopies
Cavia porcellus ENSCPOG000000113214 retrocopies
Equus caballus ENSECAG000000049251 retrocopy
Echinops telfairi ENSETEG000000153594 retrocopies
Felis catus ENSFCAG000000078542 retrocopies
Macropus eugenii ENSMEUG000000144427 retrocopies
Myotis lucifugus ENSMLUG000000053831 retrocopy
Monodelphis domestica ENSMODG000000147401 retrocopy
Mustela putorius furoENSMPUG000000132522 retrocopies
Mus musculus ENSMUSG0000007643210 retrocopies
Nomascus leucogenys ENSNLEG000000006562 retrocopies
Nomascus leucogenys ENSNLEG000000032207 retrocopies
Nomascus leucogenys ENSNLEG000000066432 retrocopies
Nomascus leucogenys ENSNLEG00000013534 3 retrocopies
retro_nleu_2543, retro_nleu_750, retro_nleu_869 ,
Oryctolagus cuniculus ENSOCUG000000104821 retrocopy
Otolemur garnettii ENSOGAG000000005473 retrocopies
Pelodiscus sinensis ENSPSIG000000126921 retrocopy
Pteropus vampyrus ENSPVAG000000053341 retrocopy
Rattus norvegicus ENSRNOG000000081045 retrocopies
Sorex araneus ENSSARG000000124764 retrocopies
Tursiops truncatus ENSTTRG000000008714 retrocopies



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